LOCUS       XM_039100691            1137 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus igE-binding protein-like
            (LOC120099615), mRNA.
ACCESSION   XM_039100691
VERSION     XM_039100691.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051357.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 36% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-117               JACYVU010000542.1  36568-36684         c
            118-207             JACYVU010000542.1  34464-34553         c
            208-849             JACYVU010000542.1  32845-33486         c
            850-851             "NN"               1-2
            852-957             JACYVU010000542.1  32739-32844         c
            958-1137            JACYVU010000542.1  28902-29081         c
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="Y"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1137
                     /gene="LOC120099615"
                     /note="igE-binding protein-like; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: inserted 2
                     bases in 1 codon; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein, and 43%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:120099615"
                     /db_xref="RGD:41168957"
     CDS             1..1137
                     /gene="LOC120099615"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: igE-binding protein-like"
                     /protein_id="XP_038956619.1"
                     /db_xref="GeneID:120099615"
                     /db_xref="RGD:41168957"
                     /translation="MRKHAPANMKPLKLECRFWTRPEKMQLTLKRLDSPGSGERGTFG
                     ARNPGKRPHPHLRRPLGNKEDSELQEQKKGNKKLLQRLSPTAPPPYEACSCTFSLVPD
                     RVKRKLRMTFPVFETQEGERVHAPVEYNQIKELAESVRKYGVTGNFNLTILERLALNY
                     LTPADWQMIAKATLVNMGQYMEWKALWYEAAQTQARANATALTPEKREWTFELLTGQG
                     CFPADQTNYHWGAYIQVSSSAIKAWKAITRKGGADNQLTCIIQGPQEPFSDFVARMTE
                     TAGGIFGXQAAPLIEQLVYEQATQECRAAIAPRKNKGLQDRLRDNENPLWVPGRLTWN
                     IKTEDQEDDNSGDPHADPGSANKSAERTTVGNNVNLPPPDAGDV"
ORIGIN      
        1 atgcggaagc atgcaccagc taatatgaag cccctaaaac tggagtgcag attctggaca
       61 cgaccagaga agatgcaatt aaccctcaag agacttgatt ccccagggag tggagagcgt
      121 gggacatttg gtgccagaaa cccgggaaaa agacctcatc cgcacctccg gagacccctt
      181 ggtaacaagg aggattcaga actgcaggaa caaaagaaag gtaataaaaa gcttctgcag
      241 cggctgtcac caactgcacc ccctccgtat gaggcatgct cttgcacatt ctctttagtc
      301 ccagataggg tgaaaagaaa gctgcggatg acattcccgg tctttgaaac ccaggagggt
      361 gagcgggttc atgccccagt cgaatataac caaataaaag agctggcgga gtctgtcaga
      421 aagtacggag ttacaggcaa tttcaaccta accattcttg aaaggttggc cctaaattat
      481 ttgacacccg ccgattggca gatgattgca aaagcgaccc ttgtgaacat gggccaatat
      541 atggaatgga aagcgctttg gtatgaggca gctcaaacac aggccagagc taatgccacg
      601 gcgttaacgc ctgagaagcg agaatggacg tttgaactct tgacaggaca gggttgcttc
      661 ccagcggacc aaactaatta ccattggggt gcttatattc aagtctccag ctcggccatt
      721 aaggcctgga aggcaatcac taggaaaggt ggggccgata atcaacttac ttgtatcatc
      781 cagggacctc aggaaccgtt ctcagacttc gtagccagaa tgacagaaac tgctggagga
      841 atatttggan ngcaagcagc accgctcata gaacagctcg tttacgagca agccacccag
      901 gaatgccggg cggctatagc acccagaaaa aacaaaggat tacaggacag gctcagagat
      961 aatgaaaatc cactttgggt tccgggacga cttacttgga atatcaagac agaagaccaa
     1021 gaagatgaca actctggtga tcctcatgct gatccaggga gtgccaataa aagtgcagag
     1081 cgaactacgg tggggaataa tgtcaacctt ccccctcccg atgccggtga tgtataa
//
