LOCUS       XM_039100689             606 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus glutaredoxin-1-like (LOC120099609),
            mRNA.
ACCESSION   XM_039100689
VERSION     XM_039100689.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051357.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 49% of CDS bases
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-157               JACYVU010000512.1  23356-23512
            158-259             JACYVU010000512.1  51429-51530
            260-507             JACYVU010000512.1  58019-58266
            508-606             JACYVU010000512.1  58268-58366
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="Y"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..606
                     /gene="LOC120099609"
                     /note="glutaredoxin-1-like; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: deleted 1
                     base in 1 codon; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 Proteins"
                     /db_xref="GeneID:120099609"
                     /db_xref="RGD:41195455"
     CDS             1..606
                     /gene="LOC120099609"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:493..495,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: glutaredoxin-1-like"
                     /protein_id="XP_038956617.1"
                     /db_xref="GeneID:120099609"
                     /db_xref="RGD:41195455"
                     /translation="MSWHVYIITVKCDIVLLASVARNEGSEAKLHPVELCISLRGLST
                     RSHDTCERRSALKPSSQPASINEHVQQIKKMEKLTIELQKMTWKLQPHSTAQEHGYCK
                     TQSGKIFLFIDTNFQYCSNTQKILKQLPFKHGLLGFVDITATNTTNLIQDYLQQLTGG
                     RIVPXVFIGIKDFIGRCSYLISLHQNGELMMWLKQIGALLL"
ORIGIN      
        1 atgtcctggc atgtctacat tatcactgtg aagtgtgaca ttgttctctt ggcttccgtg
       61 gccagaaatg agggctctga agccaagttg catcctgtgg agctgtgtat aagcttgagg
      121 ggcctgtcaa ctcggtcaca tgacacatgt gaaaggagat ctgctttaaa gccatcatcc
      181 caacctgcca gcatcaatga gcatgtacaa cagattaaga agatggagaa actcactatt
      241 gagctccaga agatgacctg gaagttgcaa cctcacagca cggctcagga gcatgggtac
      301 tgcaagaccc agtctgggaa gattttcctg tttatcgata ctaacttcca gtattgcagt
      361 aatacccaaa aaatactcaa acaactccct ttcaaacatg gtcttctggg atttgtagac
      421 atcacagcca ctaacaccac caatttaatt caagattatt tacaacagct tactggaggg
      481 agaatagttc cttgagtttt tattggtatc aaagacttca taggcagatg cagttaccta
      541 atctccctgc atcagaatgg ggagctgatg atgtggctga agcagattgg agctctgctg
      601 ttatga
//
