LOCUS       XM_039100522             532 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin carboxyl-terminal hydrolase
            puf-like (LOC120099347), mRNA.
ACCESSION   XM_039100522
VERSION     XM_039100522.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100522.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..532
                     /gene="LOC120099347"
                     /note="ubiquitin carboxyl-terminal hydrolase puf-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     4 samples with support for all annotated introns"
                     /db_xref="GeneID:120099347"
                     /db_xref="RGD:41364990"
     CDS             86..433
                     /gene="LOC120099347"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase puf-like"
                     /protein_id="XP_038956450.1"
                     /db_xref="GeneID:120099347"
                     /db_xref="RGD:41364990"
                     /translation="MEEEPTESNIEEKSEAEEPTKRNIEEKCEAEEPTQSNAEEKNEA
                     EAGPAGRENKRDEKREKIIKKVKEVLAQSPNKAKNPTVIVICYRGKKKRNPSQAEKKD
                     ETGDHSTSPNNTQ"
ORIGIN      
        1 tcttgctcat tactttcagg aggtagcact gttacagaga gctgtatagt aggggaagat
       61 aaaataacta aaaatagttc aaaagatgga agaagagcct acagaaagca acattgaaga
      121 aaagagtgag gcagaagagc ctacaaaaag aaacatcgaa gaaaagtgtg aggcagaaga
      181 gcctacacag agcaacgcag aggaaaagaa tgaggcagaa gcggggcctg ctgggcgcga
      241 gaacaagcgt gatgaaaaga gggagaagat aattaagaaa gtgaaagaag tgctggctca
      301 gagcccgaac aaggccaaga acccaacggt gatcgttatt tgctataggg gcaagaagaa
      361 gagaaaccct agtcaggcag aaaaaaagga tgagactggg gaccattcta ccagtccaaa
      421 taacactcag tgaatggcgg ccagagacct cagtagctct gcaccctctc cagaaggctg
      481 cagagccctg tacggaagag gtcatgtctg ggcaataaag gggaagctgt aa
//
