LOCUS       XM_039100512            3554 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC120099339
            (LOC120099339), mRNA.
ACCESSION   XM_039100512
VERSION     XM_039100512.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100512.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 50% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3554
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3554
                     /gene="LOC120099339"
                     /note="uncharacterized LOC120099339; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 54%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:120099339"
                     /db_xref="RGD:41279453"
     CDS             319..3522
                     /gene="LOC120099339"
                     /codon_start=1
                     /product="uncharacterized protein LOC120099339"
                     /protein_id="XP_038956440.1"
                     /db_xref="GeneID:120099339"
                     /db_xref="RGD:41279453"
                     /translation="MGQSLTTPLSLTLDHWKDVRDRADEQGVEIKKGKWQTLCTSEWP
                     TFGAGWPVDGTFNKTVILQVKDQIFHKGLHGHPDQVPYIITWESLAFEPPSWVQPFVD
                     LSWPPTPSAPLAPLSTPSSLFPVRTKKESPKTTSKPKPVLPEDSNSPLIDLLSEEPPP
                     YPVSTRSPQEAEARSSALPEAEPQSEAASSPIAGRLRHKRETVPDSTSQAFPLREREG
                     RPSIGLSPRPIFTTGSSTTPLFPRTQPNWDFNTVDGRGHLRLYRQLLLAGLRGAARRP
                     TNLAQVKQVLQGADETPSAFLERLKEAYRMYTPYDPDDPGQMTSVSMSFIWQAAPDIR
                     AKLQSPESQPLFAFEWKDPDLGLSGQLTWTRLPQGFKNSPTLFDEALHRDLADFRVQY
                     PSLILLQYVDDLLLAGATERACRLGTESLLRTLGRLGYRASAKKAQICQTQVTYLGYQ
                     LRDGQRWLTSARKQTVAGIPVPKSPRQLREFLGTAGFCRLWIPGYAEMAAPLYPLTKQ
                     GTLFQWGSQQQEAFDNIKRALLSSPALGLPDVTKPFELFVDEKKGYAKGVLTQRLGPW
                     KRPVAYLSKKLDPVASGWPPCLRMVAAIALLTKDANKLTLGQPLTILAPHAVEALIKQ
                     PPDRWLSNSRMTHYQAMLLNTEKVQFGPVVALNPATLLPLPEGAEPHDCLQILAETHG
                     TRPDLMDQPLPNADYTWYTDGCSYVADGERRAGAAITTEDEVIWASALPAGTSAQRAE
                     LIALTQALKMAEGKRLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKAEILAL
                     LRALFLPKGLSIIHCPGHQKGQSPEARENRLADASARKAAEKGQILTLVSADDHEQVS
                     PWPYDSEDINLLKKMGAVYSPRLKRWVYKEKIVMPTKLTFELISYLHKLTHLGIKKMR
                     TLLEREEVGLYLLGQGQALREATENCKACAQVNPGKVKNGIGTRPRGHRPGIHWEIDF
                     TEIRPGMYGYRYLLVFVDTFSGWVEAFPTKHETAKVVTKKLLEEIFPRYGMPQVLGSD
                     NGPAFVSRPFPGNPSTSFAARAKRHLETSSCGIPGQT"
ORIGIN      
        1 gtaaatgctt agttacttgg cttgggtcta gaccgtttgt atttgggcgg gccagagaag
       61 gagctgacga gctcagactt ctcccccgca gccctggaag acgttccaag ggtgtttgga
      121 gcccgatttg tcggagctca gtccgtatca gaaggatacg tagttttggt ggagggtgag
      181 ggatccggac cctcagtgcg tccctccgac tttttacttt caattttgcg ccatagccga
      241 gtggtgcgct tgactgttgc ttgtttgatt gttgggtgtg tttgtcttgt ttgctctcta
      301 atttaccttg aaactaacat gggacagtct ttaacaacgc cgttgagtct tactctcgac
      361 cactggaagg acgtccggga ccgagcagat gaacaagggg tcgaaattaa gaaggggaag
      421 tggcagactc tctgcacttc tgagtggccc acttttggag ccggatggcc ggtggatggt
      481 acttttaaca aaactgttat tttacaggtc aaggatcaga tcttccataa aggactacat
      541 ggacatcctg accaggtgcc ttacattatc acctgggaaa gccttgcctt tgagccccct
      601 tcttgggtgc aaccatttgt agatttaagc tggcccccta ctccctcggc cccacttgct
      661 cctctctcaa ccccttcctc tctctttcct gtccggacca agaaggaatc tcctaaaact
      721 acatctaaac ctaagccggt gcttccggaa gattctaact ctccccttat agatctctta
      781 tctgaggagc ctcctccata ccctgtatct accaggtcac ctcaggaggc agaagcaaga
      841 tcgtctgccc tcccagaagc tgaaccccag tctgaggcag catcctctcc aatagcaggg
      901 agactacgcc ataagcggga aacagtaccg gattcgactt cgcaggcctt tccccttagg
      961 gaacgggagg gcagacccag tattggcctt tctccgcggc cgatatttac aactggaagc
     1021 agcacaaccc ccctttttcc aaggacccag ccaaactggg acttcaatac ggttgatggt
     1081 aggggacacc tacgccttta ccgccagttg cttttagcgg gtctccgagg ggctgcccgg
     1141 cgcccaacca atttggctca ggtgaagcag gtattacagg gggccgatga gaccccctca
     1201 gctttcttag aaagactaaa agaggcctat cgcatgtaca caccctatga tccagatgac
     1261 ccagggcaga tgacgagtgt ttctatgtcc tttatctggc aggctgcgcc agatatcagg
     1321 gctaagttac agagcccgga aagccaacct ttatttgctt ttgaatggaa agatccagat
     1381 ttgggacttt cgggtcaatt gacttggact agactgcccc agggatttaa aaatagtccc
     1441 actctgtttg atgaagcttt acatcgagat ttggctgatt ttcgagtcca gtacccctct
     1501 cttatactcc tgcaatatgt tgatgacctg cttttggcag gtgccactga gagggcatgc
     1561 cgtttgggga cagaatccct cctacggact ctggggcgcc tgggctatag ggcctcagcg
     1621 aaaaaggccc aaatatgtca aactcaagtc acttatctgg gatatcagct gagagatgga
     1681 cagaggtggt taacctcagc tcgaaaacag actgtggctg gcatcccggt tccaaaaagc
     1741 ccccgtcagc tgagggagtt cttaggcacg gcaggattct gccgcctctg gatcccgggt
     1801 tacgccgaga tggctgctcc cctatacccg cttactaaac aagggacatt gttccaatgg
     1861 gggtcacaac aacaagaggc ttttgacaac atcaagcgtg ccttattgtc ctcccctgcc
     1921 cttggcctcc cagatgttac caagcctttc gagctgtttg tagatgagaa gaaaggctat
     1981 gcaaaaggag ttcttacaca aagactaggg ccctggaagc ggccagtggc ctatttatca
     2041 aagaagttag accccgttgc ttcaggatgg ccaccttgcc tgaggatggt agcagcaatt
     2101 gcactcctga ctaaggatgc taataaactg accctaggac agcctctgac tattttggca
     2161 cctcatgcgg tagaggccct gataaaacaa cctcctgacc gatggctctc taattcccgc
     2221 atgactcatt accaagctat gttgttaaac acggagaagg tccagtttgg tccagtagtg
     2281 gctttgaatc cggctaccct actcccctta ccggaaggag ctgagccaca tgactgcctg
     2341 cagatcttag cagaaacaca tggaaccaga ccagatctaa tggaccagcc tcttccgaat
     2401 gctgactaca cctggtatac ggatggctgc agttatgttg cggatgggga gcggagggcc
     2461 ggagctgcca tcaccaccga agatgaggta atctgggcaa gtgccttacc tgcaggtacc
     2521 tccgctcaac gagccgagct cattgccttg acacaggctc ttaagatggc agaaggtaag
     2581 agactaaatg tatatactga cagccgttat gcatttgcta ccgcacatat tcatggtgaa
     2641 atctatcgga gacggggatt acttacatca gaaggaagag agatcaaaaa taaggctgaa
     2701 atcttagctc tcttgagggc tctattccta ccaaaaggac tgagtatcat acattgtcca
     2761 gggcaccaga aaggacagag tccagaagcc cgggaaaacc ggctggccga cgcttcggct
     2821 cgaaaggctg cggagaaagg acagatcctg actctggtca gtgcagatga ccatgagcaa
     2881 gtttccccat ggccatatga ttcagaggac ataaacctcc taaagaaaat gggggcagta
     2941 tactctcctc gactaaaaag atgggtctat aaagaaaaga ttgtcatgcc tacaaaattg
     3001 acttttgaat taatatctta tttacataaa ctaactcacc tgggaatcaa gaagatgaga
     3061 actctcctgg agcgagagga agtaggtctt taccttttgg gacagggtca ggccttgcga
     3121 gaagcgactg aaaactgtaa agcttgtgcc caagtgaacc cagggaaggt gaaaaatggt
     3181 attgggactc gtcccagggg gcatcgtcct ggcatccatt gggagattga ttttactgaa
     3241 atcagaccag gcatgtatgg ttacagatat ctgctggtgt ttgtggatac attttcagga
     3301 tgggtcgagg cctttcccac caaacatgag actgcaaagg tagtcaccaa gaaacttctt
     3361 gaagagattt ttcccaggta tggtatgccg caagtcctgg gatcggacaa cgggcccgct
     3421 ttcgtttccc ggcccttccc tggaaaccca tctacaagct ttgcagctcg tgcaaagaga
     3481 catctggaga cctctagctg cggcataccg ggacagactt gatcagccga ctgtgccaca
     3541 cccgttccag gtgg
//
