LOCUS       XM_039100494            5808 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus retinal homeobox protein Rx3-like
            (LOC120099328), mRNA.
ACCESSION   XM_039100494
VERSION     XM_039100494.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100494.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5808
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5808
                     /gene="LOC120099328"
                     /note="retinal homeobox protein Rx3-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:120099328"
                     /db_xref="RGD:41173557"
     CDS             4458..5621
                     /gene="LOC120099328"
                     /codon_start=1
                     /product="retinal homeobox protein Rx3-like"
                     /protein_id="XP_038956422.1"
                     /db_xref="GeneID:120099328"
                     /db_xref="RGD:41173557"
                     /translation="MMGRWVLSGAFLIYFLFPCSLVQEHTPTVQNTDMSEGPSFYPKF
                     QMSSYTPRDISSQLPQEPAWNLAFQMGQSPLVTSRTPMQSSPSVREQKVHWQESQGSS
                     IESSIQMQPGPVMNPGLPTLRRPSGHPSHQSPSRPSSRSGFHVPIGPLVESDKYGKKQ
                     TGPVAPRKPRMEKRTQYSTKQKSVLQECFAECQYPDQKLCMELASLVGVTEKEIKVWF
                     KNNRAKCKQKNVPEALPETNGGSKAVSGSSNFPGSIAVVGYDQGEPMTTAMLDVDSTP
                     KLNCSQESSLDGYWTYDGAMCCLQEDVLDGNAPVTAGDSGESAPVEAQADIAAARAPV
                     AIAVATQSPQDWQDLHPCEEELWQGMLEDFHQLEDWFTKNYIESPSSTSHPLD"
ORIGIN      
        1 ggtagtggct tagtccctgg aagctctggt tggttggcat tgttgtccat atggggtctc
       61 gagccccttc aagctcttcc atacctttct ctgattcctt taacaggtgt acccacattt
      121 ctatgtgaaa aattactata gatcaaataa tatatcaaac cctaagtatt gatagtagaa
      181 gacttcaaca ccccaatctc atcaacagat agattatcca gacagaaact aaacaaaagt
      241 catgagatga atagaggtta tgaatcaaat agtcctaaca cttctatagc acattgcaaa
      301 cagataagaa tgtatcttat aagcacttca tggaactctc taaaattgac cacatacttg
      361 gtcacaaagc aagtcggaac aggttcaaga aataaccctt tgtatcttat cagatttcct
      421 tggattaaag cttggcttga acaacagaag caaaagaaaa cctacatact cacgtaaact
      481 gaaaaactgt ctaatcaatg gttgttaggt aaggcaagaa gtaaagaaat tgaagccttt
      541 taaaattcaa ataaaatgag ctcacaacgt ccgcaaactt atgggaaaca gtaaagcagt
      601 gctaggagaa aagttcatag cattaaatgc cttccttaaa aaattaaaga gttcttatac
      661 taacaattta aaagtatatg tgaaagcact actaagaaaa gaaagacacc aaaaaggagt
      721 aattggcagg atataatcaa actcaggact gtttctagtc aatcaattag aaacaaagag
      781 aataatagaa tcaagaaaag caggttcttt cacaaaacag acatgataag caaatgcttt
      841 ggcatgttag accatacaca gatcaggaaa atcatgaggg aatataatgg acactgaaga
      901 aattctgaga atcattagat cttgcttcaa aagcctatgc tccacaacat gggaaattct
      961 aaaaaaatgg attattttct aaacagatac cacttagtaa tgataagttg agaacatctt
     1021 atatatctaa acactcctgt atacccttga gtaaaagaag cagaccttga aagtcaccca
     1081 aatgaaacaa aatctcaggg cgagatggtt ttagcacaga tttctaccag gctttcaaag
     1141 aacagctgat accaatactt ccaagagtat tgcatacaaa agaaggagaa taaacagtgc
     1201 caaattcatt ctgtgaggac tctgtcacct tgattcgcaa accacacaca gattcaacaa
     1261 agagagtttc acatccattt ctcttatgaa catggatgca gaagtagtca acaaaatact
     1321 cagacaccaa atcacagaag acatcaaaga aatcatcaac catgatcaag tggttttcaa
     1381 gccagggttg aaaggttgct tcaatacaag aaaatccatc cctgtaattc accatatgaa
     1441 caaatgagag aaaaatatca caggatcctc tcattagttg ctaaaaaagc ctttgacaaa
     1501 atccaactgc ccttcaagtt agaagtcttg gtgatacaat gtacctagct gaactctgag
     1561 ttttattggg gttacttaga tgttgttcta gtctgggact aacagtctaa cactcaggta
     1621 ggacatgtgg tcagagggac atttttggtt tgtgtagact ccattatttg gtgtggtgaa
     1681 ttatattcac gtggagttta atttaccttt taaaattttt tattaaagag aataaatttg
     1741 aaatatgatg ggtatagatg ttgataagag cttggggagg agacttgata gcatatatat
     1801 tcatatattt agatgcatat tttaattgtg aggatatttt ctgtgtagtt ctatcctgta
     1861 aagtggtatg tagagaaaga cagcttggaa ctgacagaga tgcaccattc tctgtctcct
     1921 gagtccttcg aatttaggta gacacccatc caggatcatg aaatgtattg caggaagatt
     1981 ttcctaaaaa cccaggaatt gtttttgtgg gtagaactag atcacttaga agcttgtgaa
     2041 gaaaagggct ttgtgcaacg acagacccta actcaaaaat aaaacaaaag aattgtgatt
     2101 caatcaaaga caaggactct ctagggtggg gctgaaatag cgttgacagc aaatggtgtg
     2161 tttatccaat gaatttgaag acccggggag tgggaggagc caaagagtgg gtggagcttt
     2221 gactatcgtg cctggagaag atatttaagg cctggttctg gaagaacagg taaaacacag
     2281 tgaagaatcg aaacaaggta aagcgagctg ctgtttttca ggtgagtgag tgtcctgaat
     2341 acattttgta aatgatgtat attttgcggg tggttaccct catggaagag agagggagct
     2401 agaagatgaa gagcttgggg ggcattagca ggtggtgtat gtgtttggag gttgaggtcc
     2461 cccaaatcgc cagagttggg caggtagtcc tgaggaaagg caggggcagc gcacttgttt
     2521 ctccacaggt gttaacactt ggaaagaagt gtgcagtgct cctggaacac agatcaagag
     2581 agctagtaag acccaatgtt gcaggcccat ctactgtgct tttgtatagt taccaaggcc
     2641 gaggcctgag ccctttgttg ttcagtaagc ctagatcagc ctggtctaat agggaggctg
     2701 tgaatcaaaa ccgaaacaag agacaataaa acaagcagaa ttaaacccat aagaatagag
     2761 ctctaggcgg ttattatgaa gccagtgtgt catcaaaggt gggtgaaggt aacgggcttg
     2821 aatgtctgta aggtatgagg aaccaaagag atatataagt gcaagttata tatggtagaa
     2881 tttacataat agaagtcaaa cagagctttg ggcaagcagc aagagcccac aggattcctg
     2941 tccagttggt gggctgcatg aaatgcttaa ggttgctggg tgaagggggc atcctggtgg
     3001 ggaattccgg gaattagtgg aggaagagct ttgataatat tctgcgtcat gtatgggtgt
     3061 ttgatgagta aagtctaaca tatgccttgt agagaggcag aagatattaa gtaaattagg
     3121 agctctttcc atgtgaatgc tgggaatctc ttaggtgcag ggattggagc agtctgtgaa
     3181 taagcattaa ggagaccccc aggtgctctg ttctacattc taggcactat cctgagcact
     3241 gtgttgtata tgaagcctaa ttcaatagag agtcttgact ctaggagatg tgtatcgttt
     3301 gatttctctg atttatttcc tgttaaacgt gcatgcagga ctaggataaa ctcacaatga
     3361 gctctccagt gccctgggac caaagtgtgg tctgggctgg ccaagatagg ccaaggttgt
     3421 gatattttgg ctcaaaagtg ggacacctag agaggtttat gcctgagtag acattcattc
     3481 aacaagaaga gaaccacaat tccagttctc aggagccatt ggctttgggt gtttgtgata
     3541 ataaggcctg gattgtctgt agaatgagat ccaggaagtc atgtgcattt acaaggaaag
     3601 gaaagaagga atgaagagag aaacattgaa agaagaggga attaccacgt gactgaactg
     3661 agcaggaatg aacaggtccc ttgggcagca gcatgagaag agacccattt ctagagatgg
     3721 tcacagaaga gggaaggaaa gatttctgtg tatggaaccc aaaggacagg agacccaaaa
     3781 gaatgtcacc attgtggtgt ttcatacctt taattcaggc actggattgg gtttggtaac
     3841 aggcaggtgg atctctgagt tcaagttcag ccttgtcttc agatggagtt ataggacagc
     3901 caaggtcata cagacaaaac ttgtctcaag aaagatgtct tctacctggt caagtttcca
     3961 taagatgtgg ctgcagacta agtgtggtca tagggtggga atgtctgctg gatgtgagtg
     4021 gatgaaaggt ggagcatatg ggagggtcgt gggtggcaat taaagcaatg tcttggagta
     4081 gagattctat atgaggtgga tctgtgtgag gagtgagagt cttatgatat atgtggtaat
     4141 tagatcatta atgttcttgt gtatgagatg agggtgaggt gtgatcattg agatgctgca
     4201 aattccatgg ccccttcact ccttgttcgg agagagcacc agcagaaatg atgaggattt
     4261 gtgactttaa aatcattggg caggacatcc aattgccctc ctccctgggc tgacaatctg
     4321 atattaatgc aggagctagt tgcaagttta ttgaagtatt gagaatgcta ataagcttgg
     4381 gaaccaggca gttagttggt cagaatgtct gagtgagttc tgctctataa gaagagcaaa
     4441 gtaaatgctg ggtaggcatg atgggtagat gggtgctctc tggagctttt ctgatatatt
     4501 tcctttttcc atgttctcta gtacaggaac atactccaac agttcagaac acagatatgt
     4561 ccgaaggtcc ctccttttat ccaaaattcc aaatgtcttc atatacaccc agagacatca
     4621 gttcccaatt gcctcaagag cctgcatgga acttagcttt tcaaatgggt cagagtcccc
     4681 tagtgacctc aagaactcca atgcaatcaa gtccttcagt gcgtgaacag aaggtacatt
     4741 ggcaagagtc ccaagggtca tcaattgaat caagtatcca gatgcaacca ggtcctgtaa
     4801 tgaacccagg tttaccaact ctgagaagac cctcagggca tccaagtcat cagagtcctt
     4861 caagaccctc atcgagatct ggtttccatg ttcccatagg acctttggta gagtcagata
     4921 aatatggcaa aaaacaaact ggccctgtgg ctccaaggaa gccccgaatg gaaaaacgca
     4981 ctcagtactc cacaaaacaa aagtccgtgc tgcaagaatg ttttgctgag tgccagtacc
     5041 cagaccagaa actatgtatg gaactggcat ccttggttgg tgtgacagag aaggagatca
     5101 aggtctggtt caagaacaac cgggctaaat gcaaacagaa gaatgttcca gaagcacttc
     5161 cagagacaaa tggaggctct aaagctgttt ctgggtcatc caattttcct ggttccatag
     5221 ctgttgttgg ttatgaccag ggagagccca tgaccacagc catgttggat gtagattcca
     5281 ctcccaaact gaactgcagc caggagtctt ctctggatgg ctattggacc tatgatggtg
     5341 ccatgtgttg tctgcaagaa gatgtgcttg atggtaatgc ccctgttact gctggagact
     5401 ctggtgaatc agcaccagtg gaagcccagg ctgacatagc agcagctaga gctccagttg
     5461 ccatcgcagt tgccacccaa agcccacagg attggcagga tttacatcca tgtgaggaag
     5521 agctctggca agggatgctt gaggactttc accaactgga agactggttt accaagaact
     5581 acattgagag tccaagcagt acttctcacc cccttgacta gtttagacat ttacatctat
     5641 gaagaagcat gttaatggac acccgtaacc cctgaatttg gggaaatttc ccaagtctat
     5701 atgcattagt ttcatgccat tgtgattata atgtgaggtc atttaaaaaa caattgaaag
     5761 tatgcattcc ttattgttgg attatatgtt ctctaataaa gcaaacat
//
