LOCUS       XM_039100409             987 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cancer/testis antigen 55-like
            (LOC120099287), mRNA.
ACCESSION   XM_039100409
VERSION     XM_039100409.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100409.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..987
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..987
                     /gene="LOC120099287"
                     /note="cancer/testis antigen 55-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:120099287"
                     /db_xref="RGD:40947786"
     CDS             229..948
                     /gene="LOC120099287"
                     /codon_start=1
                     /product="cancer/testis antigen 55-like"
                     /protein_id="XP_038956337.1"
                     /db_xref="GeneID:120099287"
                     /db_xref="RGD:40947786"
                     /translation="MLSLLRWISTFFHGSNTSEEISEEQPQDNTKLKSIQGVVTSLCN
                     YYGWINDSILFNVEVISDNVPLKIGTNVLALVEQDEVTHTLKAIKVKVMNDLPEGSEP
                     SKLGRRLCIRCVTSVTEEDVYISEDVSFPLYLFSGAFKPFKGDLVLVEYSMNAGTSNI
                     NIHSVSPLNSQDIDEVYISSIDGRNGMVEARVFFTLDSLQIPSGYTPGLYDIVDVVAV
                     DSIQQHCSLRAVSVTPVQVEI"
ORIGIN      
        1 tggctgacca gtgggaaaag gttgcctttg aagcagaggg agctttatgg gaagctggcg
       61 gtaggtgagg aggtacccag acactggctc tcctaagagc ttcatcttag cgattcacta
      121 ccatcacaca gaggctgggg aacgggggtg taaactaagt gagacaaagg aagtctgctg
      181 aatcatctgt aagcctcgga cactggctgg gctggaggtg atatcaccat gttgagcctt
      241 ctacggtgga tatccacatt ctttcacggg agcaacacgt ctgaagaaat atcagaggaa
      301 cagcctcaag ataacaccaa gttgaagtct attcagggag tggtcacctc tctgtgcaat
      361 tactatggct ggatcaatga ctccatcctc ttcaacgtgg aggtaatcag tgacaatgtg
      421 cctctgaaga tcgggaccaa tgtccttgcg cttgtggaac aagatgaagt aactcatacc
      481 ctgaaagcaa tcaaggtgaa agttatgaat gatcttcccg aaggcagtga gccatcaaaa
      541 cttggcagaa ggctttgtat tagatgtgtc acctctgtaa ctgaagaaga cgtgtatatc
      601 agcgaggatg tgtctttccc attatacctc ttttctggcg cattcaaacc tttcaaagga
      661 gacttggtac tggttgagta ttccatgaat gcaggcactt caaacatcaa tatccactct
      721 gtgagccccc tcaactctca ggatatagat gaggtctata tttctagcat tgatggaaga
      781 aatggcatgg tggaagccag agtctttttc accctcgact ctctccagat accttccggg
      841 tatacacctg gattatacga cattgtagat gtcgtcgctg ttgacagtat ccagcaacac
      901 tgttcactga gggcagtatc agtgacccca gtacaagtgg agatttaacc agacctacaa
      961 ttcgctttct ggcttatgcc taaggtt
//
