LOCUS       XM_039100346            1621 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cancer/testis antigen 55-like
            (LOC120099259), transcript variant X1, mRNA.
ACCESSION   XM_039100346
VERSION     XM_039100346.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100346.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1621
                     /gene="LOC120099259"
                     /note="cancer/testis antigen 55-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:120099259"
                     /db_xref="RGD:41113568"
     CDS             451..1278
                     /gene="LOC120099259"
                     /codon_start=1
                     /product="cancer/testis antigen 55-like isoform X1"
                     /protein_id="XP_038956274.1"
                     /db_xref="GeneID:120099259"
                     /db_xref="RGD:41113568"
                     /translation="MGVTTSRPSCTCCSCFSDCGARRLLRLLYFFQWNIQSVERDRTH
                     LEGEPNTKVVKGIVTSCGNDYGWIEDCVFFSTDVVIGAMPLQAGDKVLAYVEEDPVLH
                     ELKAKEVCICSEDNVPKGADSKIQDLSACVSHVKNDIIYMADEYHFHLDSITKAILGF
                     TPYEGDWLDIEYSVEQGSSKITVHSVKATKRRRLEEVCVTSIHRRKGMLNHTIFFTFD
                     SLHLPLGYTPLVGHMVNVVMVQSIRSNYNWRAISMTPVEQVVGVTGPGNLSSLFSCQ"
ORIGIN      
        1 ggcaattaat ggtcaatttt tattctgaat gcatactgga ttttgcttgt tcgcccaggg
       61 acacatttgg ggcaccgggc ctaagccaga gctctagtcc tctcagcgaa tgttgcacta
      121 atctcttccc aacattcaga gaacgcgcca ggcatcatca gatagttcat ttatatcttc
      181 ttcctatccc cgggacaaaa tgcatagagg atccatgttt ctccgcccga agcttgccat
      241 tggccagagg agcattatga gaacgtgctc tgcccccatt ggctgttctg gaacaatgcc
      301 cactggttac caagctctca ggagaggctg tggaagggac tcctgttgag ctgccagggt
      361 gctaagatga gcctggctgt ccggagggct gcccagtagc catctggtac catttcccag
      421 gtttgaggga agaaatcaag aggtggcacc atgggtgtca cgacatcccg gccttcgtgc
      481 acctgctgca gctgtttctc tgactgtggt gccaggcgtt tactcaggct gttgtacttc
      541 ttccaatgga atattcagtc tgtggaaaga gaccgaacac accttgaagg cgaaccaaac
      601 actaaagttg tgaagggcat cgtgaccagt tgcgggaatg attacggctg gattgaagac
      661 tgtgtcttct tcagcactga cgttgtaatt ggtgccatgc ccctgcaagc tggagacaaa
      721 gtccttgcat atgtggagga agacccagtc ttgcatgaat tgaaagccaa agaagtttgt
      781 atttgttcag aagacaatgt gcctaaggga gctgactcca agatccaaga tctatcggct
      841 tgtgtttccc atgtgaagaa tgatatcatc tacatggctg atgaatacca cttccatcta
      901 gacagcatta ctaaagccat cttagggttt acgccttacg aaggggactg gctagatatc
      961 gagtactctg tggagcaagg atcttcaaaa atcacagtac actcagtgaa ggccacaaaa
     1021 cggaggcgac tggaagaggt gtgtgtgacc agtatccaca ggagaaaagg aatgttgaac
     1081 cacaccatct tcttcacctt cgactccctg caccttcctt tgggatacac ccctctcgta
     1141 ggccacatgg tcaacgtggt gatggttcag agcatccggt ccaattacaa ctggagagca
     1201 atctccatga ccccagttga acaagtcgta ggggtcactg gccctgggaa tctctcctca
     1261 ttattttcat gccaatagag ggtcccagtc aacgcaaatg cttaagttag gaattttaaa
     1321 gaacatgtta accatgaact tccaggtcaa gagcccgcct agatccaacc agacggcaag
     1381 catcagagtg gccaatgggc catcttcctc tgctagactg ggaactttct aatcgttatc
     1441 ttctgaagaa tcccagaaaa ccccttgcag tgatagataa taagggccga gttcgtgttg
     1501 ttatttttaa taaatgaagt ttttgagcag cagcagtgct tatccacagc catggccaac
     1561 cgccatccag tcccccggaa ttaagttggt cagtgttccc atagagcaga gcttactcct
     1621 c
//
