LOCUS       XM_039100332            5158 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus U1 small nuclear ribonucleoprotein
            C-like (LOC120099250), mRNA.
ACCESSION   XM_039100332
VERSION     XM_039100332.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100332.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5158
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5158
                     /gene="LOC120099250"
                     /note="U1 small nuclear ribonucleoprotein C-like; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:120099250"
                     /db_xref="RGD:41360768"
     CDS             4518..4997
                     /gene="LOC120099250"
                     /codon_start=1
                     /product="U1 small nuclear ribonucleoprotein C-like"
                     /protein_id="XP_038956260.1"
                     /db_xref="GeneID:120099250"
                     /db_xref="RGD:41360768"
                     /translation="MLKVYWDDCDTYLTHDSPSVRKTHCSGQKHKENVKEYYQKWMEE
                     QAQSLTDKTTAVFQQGKIPPAPFSAPPPAGAMIPPPPSLPGPPRPGVMPVPHMGGPPV
                     MPVMGSPPPGMMPVGPAPGMRPPMGGHIPMMPRFPMIRPPARPMMAPTQPGMTQPDR"
ORIGIN      
        1 acttttccca cagctaattt ttgcaggcat ttttcctgta caattattga aaaaagttaa
       61 tcatcaatca actaacattt tgagactttt ctccaaattt cctcaatgtg ttgcctttct
      121 tttattcaaa gtggagttga gtgatagaat gtataactga gtgaaaggaa agattggaac
      181 tatggccatt ctcataagtc tcaataagaa gtatgtgtgg gcatgaaggg gtgacattct
      241 aatctactac aactcttcca ttaaattaga agcctgtact gcacctgtgt caggtagagt
      301 gctgcgcact tgaatgacaa ttctttgcaa aagcaactgt taaaaagtct aggctacagg
      361 aggcactacc acagtttgga ttcaggttga atggaagctt tcttcagtaa aagtagggac
      421 tgaagaaaag gaaaaagaaa agcatcaagg tgaacagcaa acctcaatat ggtttagact
      481 gaaataatat gtgcctcaca aggagacaca catccaaagc tactgtcccc agccagcatc
      541 taggatctgt gaaaagattc tcctgtgagt agcaaaagag gcaatgaaga gagatcattg
      601 tggagcctgg gacaggagat acaggaagct tccatgttct acgtaacctt atgccctttc
      661 accttcaaga aactgtatac aagtagcctc tgttagcttc cctgcaaatg acacctgaac
      721 agtaatgtga ccctctaaga gtggtcatgt ataccttaga gcacaaaggt atacaaggtg
      781 gccatttgct ttgattttat tatatttgag gatagggtaa tagtgtaata aactactaag
      841 tttatagaac tataactgag gtgaatcacg ccacaggtag agtttgtccc agctgtagtc
      901 tacactcctc tttgaatcaa gggaatacag actctacaag gtgactggga gtggagaggt
      961 atgaggtttt tctttaattt tgagattctg aagatatatc tgcacatgat ttgatcataa
     1021 atacagagta caccaaaagc tcagtgtttc tccatgggag ccatttgaaa tttcacttgt
     1081 ggagaaaagg tttccccttt atactagaac taatgttttt cttaatagaa aaacaaaaat
     1141 aaaagtcaat agaaaaatga atacatgaga gttagaggtg aggttctttc tatggggaaa
     1201 aagctttgtc ctccgggcaa gataagttta acaatgagag ggttgggagt tgatgatgca
     1261 gatgggtttg cagctggaac aacaggccct gggtcccaca aaaacatggt cggctggaag
     1321 gttgaaataa aaaggcagaa gggtacacag caaaggcaat aaaacaatag tggaaagact
     1381 cttggctctc aaagatagga aattggcagc atgggggaag gggagtagcc agcttcatat
     1441 accaactact gaacaaatgt tgttaaatat tgcttgctgt gaattaaact tcccaatata
     1501 gctctgtgcc aaaaatgttc aacaagatat ggtgcatgtg caaaaagcac tacttgattt
     1561 aatgtcacaa acacatacta tgtaaagagc aaagctcata aaattcatac cgtggatatt
     1621 ttgtggcagc caaagtcagc tgaaggaggt gtgggtggtg ctattcaagg ggttcatggg
     1681 catatgtggg ggtggcatga acacaaagct taggttccaa ctaagaaaga taggtcagat
     1741 atccttctaa gatttagtaa attaagtaac gtttgttatc tattgtatac tacgtcttgt
     1801 cctgggtccc atatttacat ccgtgaacat gcccctcaag agcttacaca attagtaaaa
     1861 tgttccaata acagtagagt gttagaagta ttaatagaag ttcacccaga ggctgggaag
     1921 gtggatcaga tttaagggtt ttcattcttc ttgccaagaa cctgacttca gttctgagca
     1981 cccataaggc agcccacagc cttctgtaac tctagttaca gagaatctga catccttttc
     2041 cggcgtctgt gggcactgaa tgaatacagt gcacctatac ttacatagtt acatgcaaaa
     2101 cactcatacg cacacacaaa caacaattgt tttaaaagag gtccactcag gtgttcgggt
     2161 gggttaatcc agcctaggtt taacagggtg ggcaaagtat gaaagcatct gtgactgtga
     2221 gttgaatgaa gcggtaatgt aagccagtgt gggaagaatt aacttggata gtcatcagga
     2281 ggcatgtgag ctggtgttta ttcagaaaaa atatattgta gcttctgata gcacatgagg
     2341 aaatgtggcc tctaataagg ctacagagat agatgaatat atttttctct tccttcgcct
     2401 ttgatgagaa ttgttatgtt gtaggggagc tgattggtct ttgctgactg ggaaggaaac
     2461 actttggatg ctcatgagat agtgtgtctt accatcatgg gcacccacat agttgctatc
     2521 tctcctgaga attgctgtca gtagcaagaa aaactttagt gatgccatgg attttaaaca
     2581 catagtcaca aaaccactgt gctggcagaa tatagtggaa tggttaatag catttttctt
     2641 ttatgtatgt actcgcaaga aagcacgcag ggtaaatctt cgactgtcga atttacaatc
     2701 tagctcccat cagtggaatg ctggtggtca ggaaaactcc cagtgaagac ttcttggaat
     2761 gcaggggcat tgacctttgc catgcttgtt ctaagcctag gtgttggctc ccctggggca
     2821 tctcagggtt aagagatttt cagaaagtgc ttccttgtgc acatcagaac tgcaaatgtc
     2881 tgcattatta gtgtcatttt gtttgttcaa ctcacaggaa catctgtgtg gggggttgct
     2941 gtggtgaagc tcgtgttgga tcctgaagca gtaagatatg tgtgtgtgtg tgtgtgtgtg
     3001 tgtgtgtgtg tgtgtgtgtg tgtgtgtggt gaaagacaga ttgctaaaaa caccaaatgg
     3061 ttcatagaaa cccttctatt ctctctgagc ccacgacgga tgtcacttaa tcttcgtatc
     3121 ctgttcccta attgatgacc tagttaccct cttatggtgt ttggaatctc tgaagggtaa
     3181 catacagaat gtaaacaaac aagcttttac gtgctacaag tttgaactca attgaaattc
     3241 acgaaaacta cttattgcta ataagcattg tggaaagaga ggctcattcc aatgggcctg
     3301 agcacagtgt gggcatcttc tttgttctgt tccttacaat gtcagaaaca agatttcttt
     3361 agagtttgtg aggttctacc tgccttgctt tcttctgcat ctccagaatc atttagaata
     3421 ttaacatttg aggccaaaaa tcatcagcag aagactctca gtcgtgctac ctttccctca
     3481 gctgcatgtc ttcttaggtg tcctgcttca tagaaaaggg ttgtgcaaga cctagttaag
     3541 atgcctctct tgacactgcc acaggaggca gaagatactt agtgggcagt aaagagagct
     3601 ctcaaatagc tgacaggaag tgtattagtc agagccctct agaatctcag aacttatggg
     3661 tagtctgaat agagtaaggg aatttgttga tttacagtct ttagtccaag tccccaacaa
     3721 tggtcagcag cagctatgaa tggaagtcca aggatctagc agtggctcag tcccacgagg
     3781 caggcaggtg aataagagag gatcttcctt cttccaatgt ccttaggtag gtctccatca
     3841 gaaggtgtgt cccagattaa aggtgggtac caccacactt agatctggga gttgcttttt
     3901 ccccagatga ccttgaactc agagatctcc ttgccttaag ctcctgggat tcatagccac
     3961 tttgcctcaa gatctccatg ccaagatcca ggtcagaaac gtgtatctcc cagcctccag
     4021 atcaggatca aaggtgagcc ttccaattct ggattgtagt tcataccaga tacagtcaag
     4081 ttgacaacca ggaatagcca ccacaggaag gaagcagaga cactggattc caccctctgt
     4141 aaagaatagg aaaagagaaa ttgtgtcctc ctggcttctt cagtgcattt tgttacctca
     4201 taagtctgtc cagaagttgt tcaaaagtgt cagttaacct gggctctcta gtgagaccat
     4261 gtttcaaaga aaatacaaaa taaaacagct agtgagatag ctcaatgggt aaagtcactt
     4321 gctggctgaa cttgacaacc cgaggaaagc aaagcaacaa aataaacagc caggcacagt
     4381 gctgggcacg gaatgccagc attcaggagg ctgaggagga gaagcaagag tttgaggaca
     4441 gtcttgtcta agtagtaaga ccctgtctct taaaattaca catacacgcc caggtagaca
     4501 acggcctgtg gaacaacatg cttaaggttt actgggacga ctgtgatacg tatcttaccc
     4561 atgattctcc atctgtgagg aagacacact gcagtggtca gaaacacaaa gagaatgtga
     4621 aagagtatta ccagaaatgg atggaagagc aggcccagag cctgactgac aaaacaacgg
     4681 ctgtgtttca acaaggaaag atccctccag ctcccttctc tgctcctccg cctgcagggg
     4741 ccatgatccc acctcccccc agtctccccg gtcctcctcg gcctggcgtg atgcctgtac
     4801 cccacatggg aggccctcct gtgatgccag tgatgggctc ccctcctcct gggatgatgc
     4861 ctgtgggacc agctcctggg atgagaccac ccatgggagg ccacataccc atgatgccta
     4921 ggtttccaat gataagacct cccgcccgcc ctatgatggc gcccacacag cctggcatga
     4981 cccagccaga cagataagag cagaaatgct ctttatcctt ttgtatttct tgttgtttca
     5041 ccaggagatc ttggtgctga gcctgagtgt ttactaggtg cacgacaagg aacttccttt
     5101 cctaacagag ggaatgcttc tggagggaga agtggtacaa aaaagtgcgg ctttcact
//
