LOCUS       XM_039100190            1011 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cancer/testis antigen 55-like
            (LOC120099190), mRNA.
ACCESSION   XM_039100190
VERSION     XM_039100190.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100190.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1011
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1011
                     /gene="LOC120099190"
                     /note="cancer/testis antigen 55-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:120099190"
                     /db_xref="RGD:41180249"
     CDS             220..939
                     /gene="LOC120099190"
                     /codon_start=1
                     /product="cancer/testis antigen 55-like"
                     /protein_id="XP_038956118.1"
                     /db_xref="GeneID:120099190"
                     /db_xref="RGD:41180249"
                     /translation="MLSLLRWISTFFHGSNTSEEISEEQPQDNTKLKSIQGVVTSLCN
                     YYGWINDSILFNMEVISENMPLNIGTNVLALVEQDEVNHTLKAIKVKVMTDLPEGSEP
                     SKLGRRLCIRCVTSVTEEDVYISEDVSFPLYLFSGAFKPFKGDLVLVEYSNNADTSNI
                     NIHSVSPLNSQDMDEVCVTSIDGRNGMVEARVFFTLDSLQIPSGYTPGLYDIVDVVAV
                     DSIQQHCSLRAVSVTPVEVEI"
ORIGIN      
        1 gtgggaaaag gttgcctttg aagcagaggg agctttatgg gaagctggca gtaggtgagg
       61 aggtacccag acactggctc tcctaagagc ttcatcttag ccattcacta ccatcacaca
      121 gaggctgggg aacgggagcc ataaactgag tgagacaaag gaagtctgct gaatcatcta
      181 taagcctcgg acactggctg ggctggaggt gatatcacca tgttgagcct tctacggtgg
      241 atatccacat tctttcacgg gagcaacacg tctgaagaaa tatcagagga gcagcctcaa
      301 gataacacca agttgaagtc tattcaggga gtggtcacct ctctgtgcaa ctactatggc
      361 tggatcaatg actccatcct cttcaacatg gaggtaatca gtgaaaacat gcctctgaat
      421 attgggacca atgtccttgc ccttgtggaa caagatgaag taaatcatac cctgaaagca
      481 atcaaggtga aagttatgac tgatcttccc gagggcagtg agccgtcaaa acttggcaga
      541 aggctttgta ttagatgcgt cacctctgta actgaagaag acgtatatat cagcgaggac
      601 gtgtctttcc cattatacct cttttctggc gcattcaaac ctttcaaagg agacttggta
      661 ttggttgagt attccaataa tgccgatact tcaaacatca atatccactc tgtgagcccc
      721 ctcaactctc aggatatgga tgaggtctgt gttactagca ttgatggaag aaatggcatg
      781 gtggaagcca gagtcttttt caccctcgac tctctccaga taccttccgg gtatacacct
      841 ggattatacg acattgtaga tgtggtcgct gttgacagta tccagcaaca ctgttcattg
      901 agggcagtat cagtgacccc agtagaagtg gagatttaac cagacctaca attcactttc
      961 cggcttatgc ccaaggttct ggtttaataa aataatgttg cgtgtaatcc a
//
