LOCUS       XM_039100187            1003 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cancer/testis antigen 55-like
            (LOC120099189), transcript variant X1, mRNA.
ACCESSION   XM_039100187
VERSION     XM_039100187.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100187.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1003
                     /gene="LOC120099189"
                     /note="cancer/testis antigen 55-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:120099189"
                     /db_xref="RGD:41195353"
     CDS             216..935
                     /gene="LOC120099189"
                     /codon_start=1
                     /product="cancer/testis antigen 55-like isoform X1"
                     /protein_id="XP_038956115.1"
                     /db_xref="GeneID:120099189"
                     /db_xref="RGD:41195353"
                     /translation="MLSLLRWISTFFHGSNTSEEISEEQPQDNTRLKSIQGVVTSLCN
                     YYGWINDSILFNVEVISDNVPLKIGTNVLALVEQDEVTHTLKTIKVKVMTDLPEGSEP
                     SKLGKRLCIRCVTSVTEEDVYISEDVSFPLYLFSGAFKPFKGDLVLVEYSMNSGMSNI
                     NIHSVSPLSCQDINEVYVTSIDGRNGMVEARVFFTLDSLQIPSGYTPGLYDIVDVVTV
                     DSIQQHCSLRAVSVTPVQVEI"
ORIGIN      
        1 gggaaaattt gcctttgaag cagagggagc tttatgggaa gctggcagta ggtgaggagg
       61 tacccagaca ctggctctcc taagagcttc atcttagcca ttcactccat cacacagagg
      121 ctggggaacg ggggccataa actgagtgag acaaaggaag tctgctgaat catctgtaac
      181 cctcggacac tggctgggct ggaggtgata tcaccatgtt gagccttcta cggtggatat
      241 ccacattctt tcacgggagc aacacgtctg aagaaatatc agaggaacag cctcaagata
      301 acaccaggtt gaagtctatt cagggagtgg tcacctctct gtgcaattac tatggctgga
      361 tcaatgactc catcctcttc aacgtggagg taatcagtga caatgtgcct ctgaagatcg
      421 ggaccaatgt ccttgcgctt gtggaacaag atgaagtaac tcataccctg aaaacaatca
      481 aggtgaaagt tatgactgat cttcccgagg gcagtgagcc gtcaaaactt ggcaaaaggc
      541 tttgtattag atgtgtcacc tctgtaactg aagaagacgt gtatatcagc gaggacgtgt
      601 ctttcccatt atacctcttt tctggcgcat tcaaaccttt caaaggagac ttggttctgg
      661 ttgagtattc catgaattcg ggcatgtcaa acatcaatat ccactctgtg agccccctca
      721 gctgtcagga tatcaatgag gtctatgtta ctagcattga tggaagaaat ggcatggtag
      781 aagccagagt ctttttcacc cttgactctc tccagatacc ttctgggtat acacctggat
      841 tatacgacat tgtagatgtg gtcactgtcg acagtatcca gcaacattgt tcactgaggg
      901 cagtatcagt gaccccagta caagtggaga tttaaccaga cctacaattc gctttccggc
      961 ttatgcccaa ggttctggtt taataaaata atgttgcgtg taa
//
