LOCUS       XM_039100186            1008 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cancer/testis antigen 55-like
            (LOC120099188), mRNA.
ACCESSION   XM_039100186
VERSION     XM_039100186.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100186.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1008
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1008
                     /gene="LOC120099188"
                     /note="cancer/testis antigen 55-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:120099188"
                     /db_xref="RGD:41153163"
     CDS             194..913
                     /gene="LOC120099188"
                     /codon_start=1
                     /product="cancer/testis antigen 55-like"
                     /protein_id="XP_038956114.1"
                     /db_xref="GeneID:120099188"
                     /db_xref="RGD:41153163"
                     /translation="MLSLLRWISTFFHGSNTSEEISEEQPQDNTKLKSIQGVVTSLCN
                     YYGWINDSILFNVEVISDNVPLKIGTNVLALVEQDEVTHTLKAIKVKAMNDLPEGSEP
                     SKLGRRLCIRCVTSVTEEDVYISDDVSFPLYLFSGAFKPFKGDLVLVEYSMNAGTSNI
                     NIHSVSPLNSQDIDEVYISSIDGRNGMVEARVFFTLDSLQIPSGYTPGLYDIVDVVAV
                     DSIQQHCSLRAVSVTPVQVEI"
ORIGIN      
        1 agggagcttt atgggaagct ggccgtaggt gaggaggtac cctgccactg gctctcctaa
       61 gagcattgtc ttagccattc actaccatca cacagaggct ggggaacggg ggccataaac
      121 tgagtgagac aaaggaagtc tgctgaatca tctgtaagcc tcggacactg gctgggctgg
      181 tggtgatatc accatgttga gccttctacg gtggatatcc acattctttc acgggagcaa
      241 cacgtctgaa gaaatatcag aggaacagcc tcaagataac accaagttga agtctattca
      301 gggagtggtc acctctctgt gcaattacta tggctggatc aatgactcca tcctcttcaa
      361 cgtggaggta atcagtgaca atgtgcctct gaagatcggg accaatgtcc ttgcccttgt
      421 ggaacaagat gaagtaactc ataccctgaa agcaatcaag gtgaaagcta tgaatgatct
      481 tcctgagggc agtgagccgt caaaacttgg cagaagactt tgtattagat gtgtcacctc
      541 tgtaactgaa gaagacgtgt atatcagcga cgacgtgtct ttcccattat acctcttttc
      601 tggcgcattc aaacctttca aaggagactt ggtactggtt gagtattcca tgaatgcagg
      661 cacttcaaac atcaatatcc actctgtgag ccccctcaac tctcaggata tagatgaggt
      721 ctatatttct agcattgatg gaagaaatgg catggtggaa gccagagtct ttttcaccct
      781 cgactctctc cagatacctt ccgggtatac acctggatta tacgacattg tagatgtggt
      841 cgctgtcgac agtatccagc aacattgttc actgagggca gtatcagtga ccccagtaca
      901 agtggagatt taaccagacc tacaattcgc tttccggctt atgcccaagg ttctggttta
      961 ataaaataat gttgcgtgta atccaaagat ctctgaacga tgactctt
//
