LOCUS       XM_039100171             665 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DNA ligase 1-like (LOC120099181),
            mRNA.
ACCESSION   XM_039100171
VERSION     XM_039100171.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100171.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 23% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..665
                     /gene="LOC120099181"
                     /note="DNA ligase 1-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein, and 58% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:120099181"
                     /db_xref="RGD:41283365"
     CDS             75..665
                     /gene="LOC120099181"
                     /codon_start=1
                     /product="DNA ligase 1-like"
                     /protein_id="XP_038956099.1"
                     /db_xref="GeneID:120099181"
                     /db_xref="RGD:41283365"
                     /translation="MAKDSDIMPEQQFNSKMTPTSKQSTGLLKTYEESSIPVSTPDKC
                     PPKETSNSCKDGSSHNDIDCPFATVEMQVTGNEPTRSSYYLRYCVMIFVYKICRSILK
                     AALSAITIWQNTMKEKEEEGEEEEKNEDMVEEEEEWYEAKEEEEMEEEEEEEEYEEIY
                     GEEDEDQYAENFCIICEIFHFMNMFVNTETTIQWEK"
ORIGIN      
        1 cacctgtcct ccaaaggtag gcagtctgga ctgtcttgag ggatgcttcg cactgcgaag
       61 tctagaaaag agtgatggcc aaggacagtg acattatgcc tgagcagcag tttaacagca
      121 aaatgacacc tacaagtaaa cagtccacag ggcttttgaa aacatatgaa gaaagcagca
      181 tccctgtaag tactccagac aaatgtccac ctaaggagac aagcaactca tgtaaagatg
      241 gctcttctca taatgatata gattgtccat tcgctactgt tgagatgcaa gtgactggga
      301 atgagcccac tcgctcctca tattacctta gatattgtgt catgatattt gtgtacaaga
      361 tatgcagatc tattctcaaa gctgccctct cagccataac aatatggcag aacactatga
      421 aggaaaagga ggaggagggg gaggaagagg aaaagaacga agatatggtg gaagaagagg
      481 aggaatggta tgaggcaaaa gaggaagagg agatggagga ggaggaggag gaagaggagt
      541 atgaggagat ttatggtgaa gaggatgaag atcaatatgc agagaacttt tgtataatct
      601 gtgagatatt ccatttcatg aacatgtttg tcaacacaga gacaactatt caatgggaaa
      661 aatga
//
