LOCUS       XM_039100163            2763 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus MLV-related proviral Env
            polyprotein-like (LOC120099174), mRNA.
ACCESSION   XM_039100163
VERSION     XM_039100163.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 50% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2763
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2763
                     /gene="LOC120099174"
                     /note="MLV-related proviral Env polyprotein-like; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 25 Proteins, and 7% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:120099174"
                     /db_xref="RGD:41014667"
     CDS             1..2763
                     /gene="LOC120099174"
                     /codon_start=1
                     /product="MLV-related proviral Env polyprotein-like"
                     /protein_id="XP_038956091.1"
                     /db_xref="GeneID:120099174"
                     /db_xref="RGD:41014667"
                     /translation="MGQSLTTPLSLTLDHWKDVKDRADEQGVEIKKGKWQTLCTSEWP
                     TFGAGWPVDGTFNKTVILQVKDQIFHKGLHGHPDQVPYIITWESLAFEPPSWLQPFVD
                     LSWPPTPSAPLAPLSTPSSLLPVLTKKESPKTTSKPKPVLPEDSNSPLIDLLSEEPPP
                     YPVSTRSTQEAEARSPALPEAEPQSEAASSPIAGRLRHKRETAPDSTSQAFPLRQGTG
                     GQTQYWPFSAADIYNWKQHNPPFSKDPVALTELIESVLLTHQPTWDDCQQLLQALLTS
                     EEKQRVFLEARKHVLGDPLFTRQGSPTGGSHRTADMESPMHPEPLKAATHTRTLLTLI
                     TLSMCWREGVAGQPSPHQVVNLSWVIGNLETGWTQVLANGAHSPGTWWPTLTFDLCQL
                     AKDSWGRTAKSPRNSYPPCRHSSWYVCLGGKRTAQCGGPETFYCAKWGCETHTNGPWK
                     AKGGDLVTFTGLAGESNIQMRFTEAGKKHDWKSGVRWGFRLNTPGQTHLGLLFSLQLV
                     REQIAPAVGSNLVLKDQRTPLLPAPAHLPRFTQTSLVTHSFTSRDSAAPTTHAPGTGD
                     QLLNLVKGAYLTLNYSDPFRTQECWLCLVSSSPYYEGVAVLGNYTNQTTAPESCSASL
                     NHRLTLPEVTGLGLCIGTVPPTHQALCNVTRKAPTGKYYLAAPPGTYWACNTGLTSCI
                     SAIILNQTSDYCVLTEIWPKVIYHEPEYVYSYFEEHPRIKREPITLTLALLIGGITFG
                     GVAAGIGTGTTALIETGHFCQLQAAMNADLKAIEESISALEKSLTSLSEVVLQNRRGL
                     DMMFLREGGLCAALKEECCFYADHTGTVKDTMAKLRERLAHRQRMSESQQGWFEGWFN
                     RSPWFATLLSTLMGPLIILLLILLFGPCILNKLVQFIKDRLSVIQTFVLRQQYQLVEQ
                     QPTEVP"
ORIGIN      
        1 atgggacagt ctttaacaac accgttgagt cttactctcg accactggaa ggacgtcaag
       61 gaccgagcag atgaacaagg ggtcgaaatt aagaagggga agtggcagac cctctgcact
      121 tctgagtggc ccacttttgg agctggatgg ccggtggacg gtacttttaa caaaactgtt
      181 attttacagg tcaaggatca gatcttccat aaaggactac atggacatcc tgaccaggtg
      241 ccttacatta tcacctggga aagccttgcc tttgagcccc cttcttggct gcaacccttt
      301 gtagacttaa gttggccccc tactccctca gccccacttg ctcctctctc aaccccttcc
      361 tctctcttac ctgtcctgac caagaaggaa tctcctaaaa ctacatccaa acctaagccg
      421 gtgcttccgg aagattctaa ctctcccctt atagatctct tatctgagga gcctcctcca
      481 taccctgtat ctaccaggtc aactcaggag gcagaagcaa gatcgcctgc cctcccagaa
      541 gctgaacccc agtctgaggc agcatcctct ccaatagcag ggagactacg ccataagcgg
      601 gaaacagcac cggattcgac ctcgcaggcc tttcccctta gacagggaac gggagggcag
      661 acccagtatt ggcctttttc cgcggccgat atttacaact ggaagcagca caacccccct
      721 ttttccaagg acccagtggc ccttactgaa ctaatagaat ctgttttact tacacatcag
      781 cccacttggg atgattgtca gcagctttta caggctcttt tgacttcgga ggagaaacag
      841 agggtgtttc tggaagccag gaaacatgtc ctgggggatc cactcttcac acgtcaaggc
      901 agcccaaccg gaggaagcca tcgcacagca gacatggaga gcccaatgca cccggaaccc
      961 cttaaagctg cgactcacac gcgtacactc ctgacactaa tcaccctgag catgtgctgg
     1021 agggaggggg ttgctggaca accaagccct caccaggttg tcaacctttc ctgggttata
     1081 ggcaacctgg agacggggtg gacacaggtg ttagccaacg gtgctcattc cccaggcacc
     1141 tggtggccta ctctaacctt tgatttatgt cagttggcta aagattcatg gggacgtact
     1201 gcgaaatctc cccgcaattc ttacccccct tgccggcatt ctagttggta tgtctgtctg
     1261 ggaggaaaaa ggaccgccca atgtgggggg ccagaaacct tttactgtgc taaatgggga
     1321 tgtgagactc atactaatgg accctggaaa gccaaagggg gagatctcgt gacttttact
     1381 ggcttagctg gggaatctaa catccaaatg aggttcactg aggcaggaaa gaaacatgat
     1441 tggaaatctg gggtacggtg gggtttccgc ctcaataccc ctgggcagac ccatctgggc
     1501 ctgttgtttt ctctccaact agttcgagag cagattgccc cggccgtagg atctaaccta
     1561 gtcctaaagg atcaaagaac ccccttactt ccggctccag cccatttgcc tagatttact
     1621 caaacctctc tagtgaccca ctccttcaca agtagagatt ctgccgctcc gaccactcac
     1681 gcaccaggta caggagatca gctacttaat ctagtaaagg gtgcatatct aactctcaat
     1741 tattcagatc catttagaac tcaagaatgc tggctatgtc tagtctccag ctcaccttac
     1801 tatgaaggag tagcagtttt aggcaattac accaaccaga ctacagcccc ggagagctgt
     1861 tctgctagtc tcaaccatag actgacactg cccgaggtca caggactggg gctctgtata
     1921 ggaaccgtgc cacctactca tcaggcactc tgcaatgtca caagaaaagc tcccactggg
     1981 aaatattatt tggctgcccc accaggcact tattgggcct gcaatactgg actaacttcg
     2041 tgcatttcag ccattatttt aaatcaaaca tcagattact gtgtattgac agagatttgg
     2101 cccaaagtca tctatcatga gcctgagtat gtgtattctt attttgagga acatccacgg
     2161 attaagagag agcccatcac tctgacttta gccctgttga taggaggaat tacctttgga
     2221 ggagtagctg caggtatagg gacaggaacg actgccctta tagagacagg ccacttctgt
     2281 caattgcaag cagctatgaa tgcagatttg aaagcaatcg aagaatctat aagtgcttta
     2341 gaaaagtctt tgacatctct gtcagaggtg gtcctacaga acagaagggg gcttgatatg
     2401 atgtttctcc gagagggtgg gttatgcgct gctctaaaag aagaatgttg cttttatgct
     2461 gaccatactg ggacagtaaa ggacaccatg gccaaactcc gtgagcgctt ggcacatagg
     2521 caaaggatgt ctgagtccca gcagggatgg tttgaagggt ggtttaatcg atccccatgg
     2581 tttgctaccc tgctatcaac attgatggga cctttaataa tccttctcct gattctccta
     2641 tttggaccct gcatcctaaa caaattagta caattcataa aagataggct ttcagttatt
     2701 caaacttttg tgttaagaca acaatatcaa ttagtagaac aacaaccaac tgaagtacct
     2761 taa
//
