LOCUS       XM_039100162            1621 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus keratinocyte proline-rich protein-like
            (LOC120099169), mRNA.
ACCESSION   XM_039100162
VERSION     XM_039100162.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 7% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-99                JACYVU010000455.1  1529816-1529914
            100-724             JACYVU010000455.1  1530108-1530732
            725-1355            JACYVU010000455.1  1530734-1531364
            1356-1401           JACYVU010000455.1  1533124-1533169
            1402-1621           JACYVU010000455.1  1534142-1534361
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1621
                     /gene="LOC120099169"
                     /note="keratinocyte proline-rich protein-like; The
                     sequence of the model RefSeq transcript was modified
                     relative to its source genomic sequence to represent the
                     inferred CDS: deleted 1 base in 1 codon; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 1 Protein, and 91% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120099169"
                     /db_xref="RGD:41146938"
     CDS             1..1524
                     /gene="LOC120099169"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: keratinocyte proline-rich
                     protein-like"
                     /protein_id="XP_038956090.1"
                     /db_xref="GeneID:120099169"
                     /db_xref="RGD:41146938"
                     /translation="MYSLCQLLLPHHRLCPSEYPMYSLCQLLLPHHRSAPCTACASYC
                     SPITGYGTYCSPITGYANHSASCTACAHFSASCTAHAHSLALCTAYAKFCAPCTAYAT
                     HCASCTSYACACAPCTPHACYSAPCTAYAFSCAPGTVYAFSCAPGTVYASHCASHTAY
                     ALACAACTAIASSCTTATIYVSHCAYRTAYDSHCTSYPSYASASSTPHACYSAPCTDI
                     ASSCDKGRVYGCYLAPCKTYASHLPHTQRIRGLVPRVQTLPPPVTQSESMADTVSPLQ
                     PMPVTVPHAQRIRGPVPCVQTLPNSVPQSESMAVTVPTAQTMPPTVPHKERMPGPGPH
                     VQSLLPPVPHEHPMPFTVHQAQPMPVSVSNAQHIPAKESSTPHVPVPREQTSPVGMNC
                     VRPIPNAAPPIRPVAVSATTVQPEPVLVPRRHLHDRFTDPELQELERVFQRNHYLSAE
                     ERKELARVMGVSEAKVQRWFKKRREHFRREQSQSGGAPPGNTPPLSEDGAGALVYHP"
ORIGIN      
        1 atgtacagcc tgtgccaatt actgctgccc catcacaggc tatgcccatc agagtacccc
       61 atgtacagcc tgtgccagtt actgctcccc caccacagga gtgccccatg tacagcctgt
      121 gccagttact gctcccctat cacaggctat ggcacttact gctcccccat cacaggctat
      181 gccaatcaca gtgcctcatg tacagcctgt gcccatttct ctgcctcatg tacggcccat
      241 gcccattcct tggcattatg tacagcctat gccaaattct gtgccccatg tacagcctat
      301 gccactcact gtgcctcatg cacgtcatat gcctgtgcct gtgccccatg tacaccccat
      361 gcctgttaca gtgctccatg tacagcctat gccttttcct gtgccccagg cactgtctat
      421 gccttttcct gtgccccagg tacagtctat gccagtcact gtgcctcgca cacagcgtat
      481 gcattggcct gtgccgcatg tacagccatt gcctcttcct gtaccacagc cacaatctat
      541 gtctctcact gtgcctaccg tacagcctat gacagtcact gtacctcata cccatcgtat
      601 gccagtgcct caagtacacc ccatgcctgt tacagtgccc cctgtacaga cattgcctcc
      661 tcctgtgaca aaggcagagt ctatggctgt taccttgccc cctgtaaaac ctatgccagt
      721 cacttgcctc acacacagcg tatacgtggg cttgtgcccc gtgtacagac attgcctcct
      781 cctgtgacac agtcagagtc tatggctgat actgtgtccc ccctacagcc tatgccagtc
      841 actgtgcctc atgcacagcg tatacgtggg cctgtgccct gtgtacagac attgcctaat
      901 tctgtgccac agtcagagtc tatggctgtt actgtgccca ctgcacagac tatgccaccc
      961 actgtgcctc acaaagagcg tatgcctggg ccagggcccc atgtacagtc attgcttcct
     1021 cctgtgcccc acgaacatcc tatgccattc actgtgcacc aagcacagcc tatgccagta
     1081 tctgtgtcca atgcacagca tataccagct aaggagtcta gcacaccaca tgtgccagtg
     1141 ccccgtgaac agacttcacc agtcgggatg aactgtgtac ggcccatacc aaatgcagca
     1201 cctcccataa ggccggtggc agtttcggcg accactgtac agcctgagcc agtgctggtg
     1261 cctcgccgcc atctccatga cagatttaca gacccagagc tgcaggagct ggaacgcgtt
     1321 ttccagagga atcactatct cagtgctgaa gaaagaaaag agctggcaag ggtgatgggc
     1381 gtgagtgagg ccaaagtgca gagatggttt aagaagagga gagaacactt caggagagaa
     1441 caaagtcagt caggtggtgc tcctcctggg aatactccac ctctctctga agatggcgca
     1501 ggagccctag tgtaccaccc ttgacctaga gccactggca gacgcctgct ttcttccacc
     1561 aacatgttat tgcctcttta tcccctaagc acttgtattt gaaataaata gattctctgt
     1621 t
//
