LOCUS       XM_039100150            3402 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus fibronectin type III domain containing
            protein 3C1-like (LOC120099143), mRNA.
ACCESSION   XM_039100150
VERSION     XM_039100150.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086039) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 5% of CDS bases
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 5 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-55                JAXUCZ010000021.1  75415049-75415103   c
            56-135              JAXUCZ010000021.1  75408855-75408934   c
            136-136             "N"                1-1
            137-760             JAXUCZ010000021.1  75408231-75408854   c
            761-816             JAXUCZ010000021.1  75406991-75407046   c
            817-956             JAXUCZ010000021.1  75406556-75406695   c
            957-1016            JAXUCZ010000021.1  75404948-75405007   c
            1017-1155           JAXUCZ010000021.1  75404380-75404518   c
            1156-1209           JAXUCZ010000021.1  75404132-75404185   c
            1210-1331           JAXUCZ010000021.1  75403287-75403408   c
            1332-1506           JAXUCZ010000021.1  75403026-75403200   c
            1507-1593           JAXUCZ010000021.1  75401945-75402031   c
            1594-1732           JAXUCZ010000021.1  75401649-75401787   c
            1733-1804           JAXUCZ010000021.1  75400980-75401051   c
            1805-1923           JAXUCZ010000021.1  75400183-75400301   c
            1924-2026           JAXUCZ010000021.1  75399957-75400059   c
            2027-2137           JAXUCZ010000021.1  75399449-75399559   c
            2138-2146           JAXUCZ010000021.1  75398397-75398405   c
            2147-2648           JAXUCZ010000021.1  75396078-75396579   c
            2649-2861           JAXUCZ010000021.1  75395559-75395771   c
            2862-3028           JAXUCZ010000021.1  75395036-75395202   c
            3029-3090           JAXUCZ010000021.1  75394195-75394256   c
            3091-3324           JAXUCZ010000021.1  75391479-75391712   c
            3325-3402           JAXUCZ010000021.1  75389441-75389518   c
FEATURES             Location/Qualifiers
     source          1..3402
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3402
                     /gene="LOC120099143"
                     /note="fibronectin type III domain containing protein
                     3C1-like; The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 1 Protein"
                     /db_xref="GeneID:120099143"
                     /db_xref="RGD:41238383"
     CDS             1..3402
                     /gene="LOC120099143"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     substituted 5 bases at 5 genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:2218..2220,aa:OTHER)
                     /transl_except=(pos:2260..2262,aa:OTHER)
                     /transl_except=(pos:2281..2283,aa:OTHER)
                     /transl_except=(pos:2287..2289,aa:OTHER)
                     /transl_except=(pos:2344..2346,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: fibronectin type III domain
                     containing protein 3C1-like"
                     /protein_id="XP_038956078.1"
                     /db_xref="GeneID:120099143"
                     /db_xref="RGD:41238383"
                     /translation="MVGLESMNVDLEGRKSFAETYPHRRLNHSLFGERTVTIGVYSRK
                     KXRDHQFGEHKTSSTFSDTPLILNKVIDISAPSGTLCPYTVDTAPSTNTDTSPLDTYS
                     LNTVLNACTTDSTPRNMADNIPDTNTTDRNMSSSGRAPSIPTLNAGFYTDINSKIIGP
                     SISTYNVVTTDETHEPPDTKSIPSYTSESACNALITENAQTCSSIKDGLRPSGAATTS
                     EENRGETETNMGAGVNKQISGEKQKKRQSSNASLRGHNTKYGTKPCCLNIERPVVSNI
                     QTRSATVSWTLNNTEKYDINLPMTFELALSSSGKNRIYKHIYTGDGVTVVLHDLQPCT
                     VYFLRVAIIRDGEHRNVSEVVSFTTPGCEPDPPLAPTLISRTKNSLNLQWKGCNDNGS
                     KISRFLLEWDEGIGEDFKSCYTGPRKQHKLFKLSPLTKYSFRLAAKNHFGCSNFSETA
                     VFYTSGNTPSAPLPPKLKEAGVYSLSLEWCAPTNPNPNDTLTYVLEMEEAKSGLGFKP
                     KYNGEDLSCTVKNLQRNTTYKFRIFAYNLEGRSNPSREVKYTTRPARPGCPNKPHVVG
                     TIHARQVTIGWDLPKDNGEMKISSYSLEVCENSDAGNLWKIIYSGTLQEFLYDDLQPG
                     TTYKLRVFCTSPAGQSRPSDVLTIQTPALPPESCSSQPLHSKSKGRDANLLDNRSVNG
                     KSEAPVRGKKAKGTHHDKKECPSSEKTCAVSSQSIVFQKYPHQHPQLSFPGVLTSHSX
                     KCSLRVSPFIPAAXKQKVRIXVXDSWFPYATKWSMHRKWLKXIANKACVFQAVNIVGV
                     GMFGGTAKVTTPGTVPAMVPMLQEVENKVPAKQSSTCIAIRWEEPDCHGSQITGYNIE
                     YGDKKIVTVKRVTEYVLKNLQPNTTYRIRIQAINHYGLSPFSPSIRCKTKPLPPEPPQ
                     LNCVVYGHQSLRLKWGTVSSKKSRAIFISYNLLMEDRSGRFSVIYRGTDVTHKVQKLT
                     EYTQYKFKIQACNEAGEGPESDIYTFTTTKSPPTALKALVVVGHAVNPITLGASLIYR
                     IYKGPNTSFSFSNYDANSRYRFKVCAGRQYETSNGLQELWGPYSPSALFSTYKHHSGH
                     GKGSGGKGKGNHSEKGEKCKLSECEDASRGCWLSHITGMAGGSPD"
ORIGIN      
        1 atggttggcc tggaaagtat gaatgtcgat cttgaaggaa ggaaaagctt tgcagagacc
       61 tatcctcaca gaagactgaa tcatagcctg tttggtgaaa ggactgtaac gattggagta
      121 tattcaagaa agaaancaag agatcaccaa tttggtgaac acaagactag ctccacgttt
      181 agtgacaccc ctttgattct gaacaaagtc attgacatat ctgctccttc tggtacactc
      241 tgtccttaca ctgtggatac tgctccaagc actaacactg ataccagtcc tctggacact
      301 tactctctga atactgtctt aaacgcttgc actactgaca gcactccaag aaacatggct
      361 gacaatattc cagacactaa cactactgac agaaacatga gttcttctgg tcgcgcccca
      421 agtattccta ctttaaatgc tggtttttac actgacatca atagcaaaat cataggccct
      481 tccataagta cttacaatgt agtcaccact gatgaaactc acgaaccacc agatactaag
      541 agtattccga gctatacttc tgagagtgct tgcaatgctc tcatcactga aaatgctcag
      601 acctgctcct caattaaaga tggtctcaga ccatctggtg cagcaaccac ttctgaagaa
      661 aatcgtggag agacagagac taacatggga gctggagtca ataagcagat atcaggtgaa
      721 aagcaaaaga agagacagtc atcaaatgca tcactgagag gacacaatac aaaatatgga
      781 acaaagccat gttgtttaaa cattgaaaga cccgtggttt ctaatattca aacacgatcg
      841 gctacagttt catggactct gaacaatact gaaaaatatg atattaatct tcctatgaca
      901 tttgaattgg cactgtccag cagtggtaaa aacagaatct ataaacacat ttatactggt
      961 gatggcgtta ctgtggtcct acatgatcta cagccttgca cggtctactt cttaagagtt
     1021 gcaatcataa gagatggaga acacagaaat gtgtctgaag tggttagctt cacaacacca
     1081 ggctgtgaac cagaccctcc tcttgcaccc acactgatta gcagaaccaa gaacagcctg
     1141 aacttacaat ggaaaggttg caatgataat ggatccaaaa taagccgctt tctattggaa
     1201 tgggatgagg gcataggtga agacttcaaa agctgttaca ctgggcccag gaaacagcac
     1261 aagctcttta aactgagtcc tttgacaaag tattccttca gattggctgc caaaaatcac
     1321 ttcggctgca gtaatttcag tgaaacagca gtcttctata cgtcgggaaa cacgccttca
     1381 gcacctctgc cacctaagtt gaaagaggca ggagtctaca gtttgtctct agaatggtgt
     1441 gccccaacaa acccaaaccc taatgatacc cttacttatg tgctagagat ggaggaagca
     1501 aagtctggat taggttttaa acctaaatac aatggagagg acctctcttg caccgtgaaa
     1561 aatcttcaga gaaatactac atacaagttt cggatttttg cctacaatct ggaaggaagg
     1621 agcaacccca gtagagaagt aaaatatact acccgtccag ctaggcctgg atgccctaat
     1681 aaaccacacg tagtgggaac gatccatgcc cgccaagtga caattggatg ggatttacca
     1741 aaagataatg gtgaaatgaa aatttcaagt tacagtttag aagtttgtga aaattcagat
     1801 gctgggaatc tctggaaaat aatctacagt ggcacactgc aggaattcct gtacgatgac
     1861 ctccaaccag gcaccactta taaacttagg gtcttttgca cttcacctgc gggccaaagc
     1921 cgtccttcag atgtattgac aattcagaca cctgctcttc ctcctgagtc ttgcagttcg
     1981 cagcccttac atagtaaaag caagggaagg gatgccaacc ttcttgacaa tcgttctgtt
     2041 aatgggaagt ctgaagcacc tgtgcgaggc aaaaaagcaa aaggtactca tcatgacaaa
     2101 aaggagtgcc ccagctctga aaagacatgt gcagtaagca gtcagagtat agttttccaa
     2161 aaatatccac atcaacaccc tcaactttct ttccctggtg tgctcacttc tcattcctaa
     2221 aaatgcagct tgcgagtctc accttttatt cctgcagcat agaaacaaaa ggttagaata
     2281 tgagtctaag actcatggtt tccctatgcc acaaaatggt ccatgcacag aaaatggttg
     2341 aagtgaattg ctaacaaagc atgtgttttt caggctgtaa atatagttgg ggttggaatg
     2401 tttggaggaa ctgcaaaagt gacaacacct ggaacggtac cagcaatggt tccaatgtta
     2461 caagaagttg aaaacaaagt gcctgccaag cagtcatcaa cttgcatagc tatccggtgg
     2521 gaggagccag actgccatgg ctctcagatc actggatata acattgaata tggagataaa
     2581 aaaatcgtga ctgtcaaaag ggtaaccgag tatgttctga aaaatctaca acctaatact
     2641 acataccgaa tcagaattca agctatcaat cattatggac taagcccttt tagcccatca
     2701 ataagatgca aaaccaaacc actgccacca gagcctccac agcttaattg tgtggtctac
     2761 ggacaccaga gtctcagact caaatggggc acagtctcca gcaaaaagtc acgtgcgatc
     2821 tttatcagct acaacttact aatggaagac cgatctggca ggttttctgt catttaccgt
     2881 gggacagatg tgactcacaa agtgcaaaaa ctgactgaat atacacaata caagtttaaa
     2941 atccaggcgt gtaatgaagc cggggaagga ccagagtctg acatctacac tttcactaca
     3001 accaagtccc caccaactgc acttaaagcc ctggtagtgg tggggcatgc cgttaatccc
     3061 atcactctgg gagccagtct catctacaga atttacaaag gaccgaacac ttccttttcc
     3121 ttttcaaact atgatgcaaa ttcacgctac cgcttcaagg tctgtgcagg acgccaatat
     3181 gaaacctcca atggtctcca agagctgtgg gggccatata gccccagtgc tctgttctcg
     3241 acctataagc atcactcagg gcatggcaaa ggcagtgggg gtaaaggaaa aggcaaccac
     3301 agtgagaaag gggaaaagtg caagctatct gagtgtgagg atgcaagccg agggtgctgg
     3361 ctgtcccata tcacaggcat ggcgggtggc agcccagact ga
//
