LOCUS       XM_039099371             454 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 28S ribosomal protein S36,
            mitochondrial-like (LOC120098991), mRNA.
ACCESSION   XM_039099371
VERSION     XM_039099371.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099371.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 8% of CDS bases
            internal stop codons :: corrected 2 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..454
                     /gene="LOC120098991"
                     /note="28S ribosomal protein S36, mitochondrial-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 4 Proteins, and 76% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120098991"
                     /db_xref="RGD:40953122"
     CDS             1..432
                     /gene="LOC120098991"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 2 bases at 2
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:286..288,aa:OTHER)
                     /transl_except=(pos:310..312,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: 28S ribosomal protein S36,
                     mitochondrial-like"
                     /protein_id="XP_038955299.1"
                     /db_xref="GeneID:120098991"
                     /db_xref="RGD:40953122"
                     /translation="MQIPTSQLYHEILYKGKMASASRVMRVVKPPAPSIRFSNRRVNP
                     KLGASEALESAVTPSHTSVTSQHSKGSMSPDFLMHQGPPDTAGIIGTLPQKXRRTPMS
                     QXEMEFIQQRSREIILASVCHQTRIISTIKDLQNVIREIVY"
ORIGIN      
        1 atgcagattc ccacctcaca actgtaccac gaaatcctat acaagggaaa gatggcttcc
       61 gccagcaggg tcatgcgggt agtgaagcca cctgcaccat caatacggtt ctctaacaga
      121 agggtcaacc ctaaactcgg tgcctcagaa gctttggaat ctgctgtgac accctcccac
      181 acctctgtaa cctcacagca ttctaaagga agcatgtccc cagatttcct gatgcatcag
      241 gggccaccag acactgcagg tataatagga acattacctc agaaataaag aaggacaccc
      301 atgtctcaat aggaaatgga atttatccag cagaggtcca gagagatcat cctagcttct
      361 gtttgtcacc agacaaggat tatctctaca ataaaggacc tccaaaacgt catacgagaa
      421 attgtatatt aaacaactta ataattattc tgcg
//
