LOCUS       XM_039099284             659 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus collagen alpha-2(I) chain-like
            (LOC120098939), mRNA.
ACCESSION   XM_039099284
VERSION     XM_039099284.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099284.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..659
                     /gene="LOC120098939"
                     /note="collagen alpha-2(I) chain-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments"
                     /db_xref="GeneID:120098939"
                     /db_xref="RGD:41255492"
     CDS             85..624
                     /gene="LOC120098939"
                     /codon_start=1
                     /product="collagen alpha-2(I) chain-like"
                     /protein_id="XP_038955212.1"
                     /db_xref="GeneID:120098939"
                     /db_xref="RGD:41255492"
                     /translation="MELPNPSPFLSERSPFPGRGVRAGPEAARSIPGARGEHGGPREP
                     GAEGPSPAPAFRAGWWRKPESGARTASAGLGREGAGPFAPGGPEQASCRRVRWLRSPP
                     GRGALGPLRPHDPRQCRASRVRQAPPAADKADNMAPSARQVARKLRRGRRPSTSSFPR
                     MAALPPAAAHPARGRAGKL"
ORIGIN      
        1 tctggagagt ctttcagact ttctagaagc cagagatgaa gtgcctggaa ttggttaagc
       61 gccctgcttt tgctctcggg tgggatggaa cttcctaacc cttcaccgtt tctctccgag
      121 aggtctccgt tccccgggag aggcgtccgc gccggtccgg aggcggcgcg cagcatcccg
      181 ggcgcccgcg gagagcacgg cggcccccgg gagccaggcg ccgaggggcc gagcccagcg
      241 cccgccttcc gcgctggttg gtggaggaag ccggagagcg gcgcgaggac agcctcggcg
      301 gggctcgggc gggaaggcgc gggcccgttc gcccctggcg gcccggagca ggcgtcgtgc
      361 cgccgggtaa gatggctccg ctccccgccg ggccgcgggg ccctggggcc gctgaggccg
      421 cacgaccccc gccagtgccg cgcgagccgg gtccgccaag cgccgcccgc tgcagacaaa
      481 gctgacaaca tggctccctc cgcccggcaa gttgctcgca agttgcggcg cggccggcgt
      541 ccctcaactt caagtttccc tcgcatggcc gccctcccgc cggccgcggc ccaccccgcg
      601 cgaggccggg ctgggaaact ttaacgtccg ccaccgcaac tgacagcctg gcgccactc
//
