LOCUS       XM_039099272            1363 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus synaptic defective enhancer 1-like
            (LOC120098927), transcript variant X1, mRNA.
ACCESSION   XM_039099272
VERSION     XM_039099272.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1363
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1363
                     /gene="LOC120098927"
                     /note="synaptic defective enhancer 1-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 11 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:120098927"
                     /db_xref="RGD:41400166"
     CDS             13..504
                     /gene="LOC120098927"
                     /codon_start=1
                     /product="synaptic defective enhancer 1-like"
                     /protein_id="XP_038955200.1"
                     /db_xref="GeneID:120098927"
                     /db_xref="RGD:41400166"
                     /translation="MLTVGDAEKQVWGQWLLSSPGEQWSSSGRSETPPPPPFAPPPQS
                     PGGAGVCLRSPDLGAPVPGRVTTASRPTSSVPIGCKSPLQRNGWGFPARAGERRPLPP
                     APERRQHPARPPRTKSYFGAWLASHLQPPPPHPSPTPPLHSSPRFCFLSSKTVDPLPR
                     IPP"
ORIGIN      
        1 tgcgcggcga tcatgctgac ggtgggggat gcggaaaagc aggtgtgggg ccagtggctc
       61 ctcagtagcc ctggtgagca gtggtcctcc agcggcagat cggagactcc acctcctcct
      121 cccttcgctc ctccccctca gtccccgggc ggggcgggcg tctgcctgcg ctctccagac
      181 ctcggagctc cggtccccgg gagggtgaca accgccagcc ggcccacttc ctcagtcccc
      241 attggctgca agtctcctct gcagcgcaat ggctggggct tcccagccag agcaggagaa
      301 agacggccgc tccctcccgc accggaaagg aggcagcacc ctgcacgtcc cccacgaaca
      361 aagtcttatt ttggagcctg gctggcctca catttgcagc caccaccacc ccacccctca
      421 cccacacccc cactccactc cagccctcgc ttctgcttct taagttctaa gactgtagac
      481 ccgcttcccc gaattccacc ttaaaacact ttaaggtcct gcttggggaa tgggagggag
      541 gcacagaaaa ctccgattgt ctgcctctgt gggtaaaaga ggcttgaagt acagagggga
      601 cgggctctgc ggtctgtaca tttggaaacg tggaggagag agagaccccg tgtcatcttg
      661 ggctcccctg tcactgtgcc acaccaaggc aggacgctgt gtccaggtca gatgcttttt
      721 gctgccaaga aagggcctgg aaggggcctc cttgaaaagg ttctctcact gcacccagag
      781 aggaacacct tgaaagtaaa cacagctccc acccaggggg atccactgtg cggctgccca
      841 gtggtttaaa agcatcatca gaattcccag agggaatgca gtagccacca atatctttcg
      901 tacacacgaa aatgctcctg aaggaaacaa ataaacgaac gaacccacat ctagacttct
      961 taccttatcc tctgtgagag ggggtcgtat ttgtggttca atgtctacag cctgaaagac
     1021 aaaacaagac ggagttacga aggcggcttg gcaacctgca tccacgcata tcgatgaggg
     1081 tagctgatca acgtgagaga acggaggcaa tgggcaaggg ccagtgccaa gcggactctt
     1141 cgggagagag gcatttccca ctcgtgaatc tattccagtg aagactcatc agatcctcac
     1201 aaaggcaccg ggagttcaaa gacgggagga caggggctgg caagaaggct ctgtggttta
     1261 gagcaccctc ttctaaactc tgagaaccct gggcaggatc atggtgctca aacatacgtg
     1321 caggcaaaac atttgtacac aaagtaagtc tttttttttt ttt
//
