LOCUS       XM_039098419            1604 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus retinoic acid early-inducible protein
            1-gamma-like (LOC120098769), transcript variant X1, mRNA.
ACCESSION   XM_039098419
VERSION     XM_039098419.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098419.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1604
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1604
                     /gene="LOC120098769"
                     /note="retinoic acid early-inducible protein 1-gamma-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:120098769"
                     /db_xref="RGD:41374743"
     CDS             352..1329
                     /gene="LOC120098769"
                     /codon_start=1
                     /product="retinoic acid early-inducible protein
                     1-gamma-like"
                     /protein_id="XP_038954347.1"
                     /db_xref="GeneID:120098769"
                     /db_xref="RGD:41374743"
                     /translation="MAMRATTKCNLSLNLGLLVLLNFLGTAMLDDVHSVSCNLIIRSP
                     TKAELLWYEGQCSMDGIDFLSFNNVNKTMPLGNQEKMANATEVWTCLTQWIELLGQDL
                     RDKVSEIKGDTTKTSGHPTLRVTMLSNHSHGQIIGASWELNISENYSFILDLKTMKWK
                     LINPVPEDIMKEWKDDATLMKHLNLSIVECSQKFNEFLNQHEERTRSTTRAPDITQPP
                     PTSQVPYKEVLIPVGLIISIIFIIFICICVKRMCCPQGGRELQLLKDYCINWHKPQRN
                     EGLDETGGEVPNQRTKMLSQEEDPKTLGGPRRASDPVELELQMISSTGS"
ORIGIN      
        1 tttgctcaca ttgaccttaa ggaatttggg gggcaggtag tcttccttct ggttctgggg
       61 cttggctgtg cgcctcctgc tgtccgctaa ggacttggcc ctttcactcc ctcaattgta
      121 ggcgtgtgct tctctctacc tttgcaggca ccaccctgac aggctcctcc tcaagacggg
      181 ggttctgccg gcctcctcag gccaccagcg cagggcgcgg cctcaggcag cttgtgccta
      241 ccgcggactg gactccttat tttgtttctt taccctgtgc tcaaggaacc ctgagggcgc
      301 agctgcagca gctctggtcg caccctaggc cgcctgggct cagaaaggac catggcaatg
      361 agagccacca ccaagtgcaa tctttctctg aatctgggtc ttttggtgct gctgaatttt
      421 ctggggaccg cgatgctaga cgatgtacac tctgttagtt gcaacttgat catcaggtct
      481 cctaccaaag cagaactgct ctggtatgaa ggacagtgtt caatggatgg aattgatttc
      541 ctttctttta ataacgtgaa caagaccatg cctttgggta accaggagaa gatggcaaat
      601 gccaccgaag tgtggacatg tttgacccag tggatagagc tattgggcca ggacttaagg
      661 gataaggtgt ctgaaatcaa aggggacact accaagacca gtggtcaccc cactttacgg
      721 gtcaccatgc tttctaacca cagccatgga caaatcattg gtgcttcctg ggaactcaac
      781 atcagtgaga attattcctt catcttggac ctaaagacta tgaagtggaa actgattaat
      841 cctgtaccag aggacataat gaaagaatgg aaagatgatg cgacattaat gaaacatctg
      901 aatttgtcca tagtagagtg cagtcagaaa ttcaatgaat tcttaaatca gcacgaggaa
      961 agaacaagat caacaacaag ggccccagat atcacccagc ctccacctac cagccaggtt
     1021 ccttataagg aagtattgat ccctgtagga ctcatcattt ccatcatctt tattattttc
     1081 atttgcatat gtgtgaagag gatgtgttgt ccccaaggag gtagagaact tcagctgctc
     1141 aaggactact gcatcaactg gcacaagcca cagaggaatg aggggctaga tgaaacagga
     1201 ggagaggttc ccaaccagag aaccaaaatg ctgtcccagg aggaagatcc caagacattg
     1261 ggaggcccca ggagggcatc ggatcctgtg gaactggagt tacagatgat ttcgagtact
     1321 gggagctgaa cgcagaacct ctccaagaac agcaagggaa cttctgagcc ttctctcaaa
     1381 ccctcgaata ttttttttcc ttaaaaaaga tttttatttt gtttatgtat atgagtacag
     1441 tgtctctgtg ttcacacaca ccagaggtgg gcatcagatc ccatcacaga tcgctctgag
     1501 ccagtatgtg ttgctgagag ttgaactcag gacctctgga gagtgagcag ttctcttaag
     1561 cgcccagccg tctcttcaga ttaataaatt tcttaaaaag aaaa
//
