LOCUS       XM_039098365            6228 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus histocompatibility antigen 60b-like
            (LOC120098765), transcript variant X1, mRNA.
ACCESSION   XM_039098365
VERSION     XM_039098365.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098365.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6228
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6228
                     /gene="LOC120098765"
                     /note="histocompatibility antigen 60b-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 2 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     29 samples with support for all annotated introns"
                     /db_xref="GeneID:120098765"
                     /db_xref="RGD:41176714"
     CDS             479..1243
                     /gene="LOC120098765"
                     /codon_start=1
                     /product="histocompatibility antigen 60b-like"
                     /protein_id="XP_038954293.1"
                     /db_xref="GeneID:120098765"
                     /db_xref="RGD:41176714"
                     /translation="MRLAAAAAAKVLSCYLSLQCLLSVCLCSGIEDTCYIRFNFTVKD
                     LSLHCYEGQCSVNGKPFLQYKDNKAKPLGNLGMEVNATKAWEDLTETIKGLLEELNKN
                     LHNMKSWPVKTKGNHILEGTLVLQYEQGRLSDSFWTFTIDRQHSFHFYPTNKLWDPPQ
                     HKANSIIREFENSIDLEDHLSMFSMGDFNNCHNMFLKLWKDVPRSTITAQDIAQLTSA
                     NTTSTTVNGTSSVPDSQHLKANWSLFLLLILIRFII"
ORIGIN      
        1 ctcactctgc ccttacaccc caccctggct cacgtcactc acccgcccca cctgccagcc
       61 aaccaaaagc ttcctgtcac ttagtgacag ttcccgctct tttccttttc ctgttctctt
      121 cccgcgcttt tcttcttctg gtgactcagg aggtcacatg ctagttcgca caagccatgc
      181 gcagctgtgc tccttcgtga ccccacccta caaagcgctg agacttgaga taagcactgg
      241 cccacatctc agtctgctgg gcacagggac cagcctgcag ggctgcagct aggctgtgaa
      301 aagatctgga gagagggaaa caagaaacct gttttgaagg actaaggacg aaggagggag
      361 gagaaggaat tgtcttgaac acatagccaa gtttcaaaac tttctctggt ccgggccatc
      421 agcaggaagt gatcaagtct ttccctccct tgggccacca gcatctagag gaggagctat
      481 gaggctggct gctgctgctg ctgccaaagt cctttcctgc tacttgtccc tgcagtgcct
      541 gctgtctgtc tgtctgtgtt cagggataga agatacatgc tatatccgtt tcaacttcac
      601 tgtcaaggat ctttctttac actgctatga aggacagtgt tcagtgaacg gaaaaccttt
      661 ccttcagtat aaagacaaca aggccaagcc tttgggtaat ctgggaatgg aggtcaatgc
      721 caccaaagct tgggaagatt tgaccgaaac cataaaaggc cttttagaag agctgaataa
      781 aaatctacat aacatgaaat catggccagt caagaccaag ggtaatcata tcctagaagg
      841 caccctggta ctccaatatg aacaaggaag actcagtgat agcttctgga ccttcaccat
      901 tgatagacaa cattccttcc acttttatcc aacaaacaag ttatgggacc cacctcaaca
      961 taaagccaac agtatcataa gggaatttga gaatagcatt gatcttgaag accatctctc
     1021 tatgttctcc atgggagatt tcaataactg tcacaatatg ttcttaaaac tctggaagga
     1081 cgtgccaaga tcaacaataa cagcccagga tatagcccag cttacatctg ccaacaccac
     1141 ttcaactaca gtgaatggta cctcttctgt acctgacagt cagcatttaa aggcaaactg
     1201 gagtctgttt ctattattga tattaattcg ttttatcatc tagttggcca agagatggta
     1261 caaaaatacg ggtgctccct gctgctcctc ttcctctgca gtctgatctg catcaccagc
     1321 tgtcgggtga cacttgaaca ttgccagtga cttcttcagc aaaggaagca aacatatttc
     1381 tgatggcatc tctgaaatct gacctgttga cttcggacca aactggtggg atcccaggag
     1441 actgatggct gtcagagcct catgcatgag ggcatcaggg tgcactaggc tgttgccatt
     1501 ggggccttcc tcttgctcta atccttttcc tttctcactc ttgccttatc attgtggaga
     1561 taaagctggg tctgcctcta aattacacat cactttccaa aacagggctt gccctaagtg
     1621 actccatttt acaagctgca ggtggctgtc tcctaagtgc catgcagaca atggagggca
     1681 tgaaacttca ctttatacag agacacattt cagcccaggg ccatcgatga ctcagagagt
     1741 gaaattacca taatctcaaa agtaagaata agtcacctgt acacttatca aaatgagttg
     1801 gaagcagtga gaatcacatg tacatatcaa attatatcag agaaccaact caaggattta
     1861 tctcaccctc acctagaccc tagaagaagc cacctaactc gcaatagtta tgtcaccaca
     1921 aacttgcccc ctggctgtct gtgtgtcagg gaacctgcag gcagagaact cctggccatc
     1981 ttaagccctc atctccgtcc acactgctaa tgtctcctcc ttgaatcact gtctgacagc
     2041 tcatctgctg ctcatgctaa tgtgggtctg catctcacct gctggatcct cagtcctgca
     2101 cctcacctgt gcagttcact cagtgctgag gcttggtgca gccctgcagc cctgcagctc
     2161 tccatgagct tccttcgcag ctcctctaac ctcctgcatt caatctgtct gtgtgtctgt
     2221 aatccctctg tctctggctc cagtctgagc tctttaaact ccaatggcaa ctcgttcact
     2281 cttctgcagc cattctgtga tctaaggcca tgagataact ctgttgtgtt caatgtgtga
     2341 tctgagagtt tgtattagta attacgactg gagacagaga gcccaggatg gccaggagcc
     2401 agttgtcaaa ggtaatcagg actacttgtt aattacaggc tgtgaattgg atggaggttg
     2461 taagttaagg catatagatt ttcctggcat agctcactga tttgggattt catacttcat
     2521 agtaaaataa cccagtgagt aaatagtcca ttagcaaaga aattagaaat acattgtttt
     2581 tcaaatgaat gcagtacctg attatagaaa attcagcttc cctaccaaac cctggtcaac
     2641 agagactaaa cttgctccat tgacccaatg cctgcctcac agcccagtga aacttcacac
     2701 tcttcagtgt gacatctgaa tcaccatatt tgttaggaag gggagaggct tacatctgtc
     2761 tcccaagagg agtgcgttag caaaataaat aacgaagcag aaatagaagt gagcaaacct
     2821 cagctcacgc atctatgatt attaatgtat acgacgaata tagaagtata ccatactacg
     2881 aattcatact gttcgaaaga aaactaagag aaatatgagt gttggtgaga aagatgagta
     2941 acagactacg taatagacaa atcctcagac ggtgctgcct ctgatgcagc atcatcgatc
     3001 tacagagccc gaataaacat gtgacagtaa cagtcctaga ccaattgtca ctatcttgac
     3061 agtagcatat gggaccatag caaaggcata gatatgttac attcagcaac tgaaaattat
     3121 acatacgttt cagtgaggaa tgagggacaa agagacaact cagtcataca gcgctcatgc
     3181 tttttgagaa tctgagttcc ctccccagaa tacgtgaaca ctgtcgtgat acatgcttgc
     3241 aatctcagca tagaggacag agggaaagag agagagaaag tgggacagag ggggtagggg
     3301 gtcgattatt gcatctctgg ggcttcgtca tcagaaggaa tagttaaatg ggtgagtttg
     3361 gtgagttcca gtacacactg cctcaagaca ccgtgggcat ggcgtcctga gtagtgacag
     3421 caaaaggtaa tgtgtagtac ccacatgtac tagtatatga acaaacatac acacaggaaa
     3481 agatacacac tatggaccaa aacacagctg atgacttcct gagatgcatt acttgggaga
     3541 tggaatgggg ctttttaaaa ctagtcacga gatgttacct gttcttggtt tctgggccat
     3601 ttcatatttg tattataata gataaaaggg gccctgcttg tgtcttctta gatgacaagg
     3661 gtcgtgacac cattgttcaa ccactgtccc aaggtgccgg aggtggtagg attcaccctc
     3721 taatcatagg aggtatcatg agaaacttag actccaagca ctagaccctg attattaaaa
     3781 gaggatattt tgattttatt tttgacagag gaactctttg aatctgcatt gctgccctga
     3841 aagatgagca gattatattg tggacaaatg atgcagacca ctttctcttg gaagggcttt
     3901 attgctgagg ataggacatt aagagccctg tgtgggaatg ctgagctctt atcggctcct
     3961 aagactatac aacttatgac atcaaccaac aatttggaga gggaaaggac tgttgttgcc
     4021 tgagttgaag gtcagactgt aacatcactc agagctcaag tggtcctcgg tgcttactgt
     4081 aggtgttggt gtagatggca gtgatggctc atcctgccac agcactaact ccatcacagt
     4141 gacttctaat ctagaccata gacatcatac tggagggttc agtgagacca gccaaagtca
     4201 ccaaagagtt aaaaccagaa ataggctgtg agcaggaata agtaattgta gcccacagtg
     4261 tttaaagggg gaactaccct tttgtggttt cagcataggc aggaggtatg accattgtga
     4321 ctgaggagga gaaatcctag aaatgcagaa ataaggggtt cataacttga cataaagacc
     4381 tcagattatt gttggaaaat agagtcaggg ggtgttttat gtatgttgta ccaaactttc
     4441 actgaaataa tgaacacgag tctccacgat gctcccagga actagctggt tgagcctttg
     4501 caggttgagt cctattaact cttcagatga accctcagtg acaggccttg taacaactac
     4561 agttggagag acgagcagga cctgttagga ctgtttcaga catcacccat ggcttccttt
     4621 gtgacctgtg gaacaaattt aagataaact taatgcactg gtttaatgac tggagattat
     4681 cctaaaatcg tggagtcaga gtttgagctg tgcttatcct attgttccgt ggcagtcttg
     4741 agtagctgtc cagtcatata caaaaacaca agagtctctt cccttaggga gagctgagtg
     4801 tggagaaaaa tcttctgtac agacatcatg ggtgttgaca gacatagaga tgggaataat
     4861 ttacaattaa atgacgacta gttgctgcaa aagggttgat acagagtttg gaataattca
     4921 agatcataga tgagaattaa ttagaacgtg agggagttgg aacttcagtt ctcccagttg
     4981 aaccaggtac tcttgagaat cctggttgta gctggtagat ttataatttt atattattcc
     5041 tgtctgtact ctgctgggat tttaagacca tgtagatgcc aacagctttc ttttgttgct
     5101 ggcagtttct ctttgaaggt tattttcagg ggtgttggag acatttaggg gccctttctc
     5161 tttagtttct tatattcatc attttctgga caaggatatt tctaagtgaa tctgggactc
     5221 tggggtctcc atatcctctc tgaagctgtc atattgtttt agagctaccc cactgtcctc
     5281 gatgctagga catggccaac ctggaggtga aggtgaaaaa tctttgccct cagcccagcc
     5341 ctttcattct cattgcttta gccctctagt ggtagccatt gcaatctcag aaagacagtt
     5401 acaccagact tgcagaacaa atagtggttt taatctgttt catagcttca tgtgtgacca
     5461 gttcacagcc aaggatacat atgaatatca ccaaattaaa ttcagggatt tccttaaaac
     5521 atcaggaggg agttttgcaa atatatttta ggaacttgat tgtgtggtcc tcaagcatga
     5581 attagaagat cactttgtat cataacatca aaaggttaga tacttcagat gaatacatat
     5641 cgtaaaaaca catattaaat caatcttaac tctgagaaga ctccattgtt aggaagttaa
     5701 agttgtgacc cactcagtta tcttagtaaa ccaaacatgt aatgaaaaag ctgttttaga
     5761 aacccatacc actttacatt gagtgtccta agccttgtga catacaaaaa cgtctgcatt
     5821 ttcaacatct cttacccatc gtgtagagtg aaaagaactt tttgtatgaa tccctcttcc
     5881 catgagctta ttctcgccat cagaaatgca tttctttgct tgcatctgtt tatgggctgc
     5941 ttccttcctt tgttaaatcc agatgtactt caggtgtctt gttttcctgg aaggtataaa
     6001 accatgaaac agcaaacatc atgttttgtc ttttacaaaa tggaattaga tccacattat
     6061 tatcaagtgt tacactgtta cttgttaatg tgctttttac tatctggctt taataaccat
     6121 gtgacattct ttgttaaatg ctgatatctc cttttgctta acaaatttaa aataattcag
     6181 gatgttagat ttgcttgtat ttcatgaatt aaaggaaatt tgaactaa
//
