LOCUS       XM_039098194            2972 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus translation initiation factor
            IF-2-like (LOC120098598), mRNA.
ACCESSION   XM_039098194
VERSION     XM_039098194.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 7% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2972
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2972
                     /gene="LOC120098598"
                     /note="translation initiation factor IF-2-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:120098598"
                     /db_xref="RGD:41104961"
     CDS             1..810
                     /gene="LOC120098598"
                     /codon_start=1
                     /product="translation initiation factor IF-2-like"
                     /protein_id="XP_038954122.1"
                     /db_xref="GeneID:120098598"
                     /db_xref="RGD:41104961"
                     /translation="MTPHLARSGGRGASPPRVPAGTGARRRRGGGARDEGRWGRPRAS
                     WRAGGGGGDHGGGPGVHNAPAEQRPRVRARPASRGEGRRASAARSRSGGWGRGPSPGG
                     RAGPERGGRCPVPSHARAARSAVAPAPVESLTYTVDELVAPRVQFLPKAASLNGALLP
                     PTHPRHLLPPARPCLRRGPAHAQPRRPGPRTHPWPRRRASRRGRRGGKAALTSPWPRG
                     GPLLLPPARRPRALAQRPTFQQPWDSAFLRRRPVPVPPSLSSEAPAAPALP"
ORIGIN      
        1 atgacacccc acttggctcg ctcaggcgga cgcggggcct cgccgccgcg cgtgcccgcg
       61 ggcacggggg cgcgccgccg gcgtggggga ggggcgcggg acgagggcag gtgggggcga
      121 ccccgtgcgt cctggcgcgc aggcggaggt ggcggcgacc acggcggcgg gcccggcgtc
      181 cacaatgcgc ccgctgagca gaggccgcgc gtccgagccc gccccgcaag ccgaggggag
      241 gggcgccgcg cctcggcagc gcgctcgcgc tccggggggt gggggagggg gccgagcccg
      301 ggagggcgcg cggggccgga gcgcggcgga cgctgccctg ttccctccca cgcacgagcg
      361 gcccgcagcg cggtggctcc ggcaccggtg gagagcctca cctacacagt ggatgagctt
      421 gtggcgccac gagtccagtt cttgccgaaa gccgcgtctc tcaacggagc attgctgccg
      481 cctacacacc ctcgccatct tctgccgccc gcccggccct gcctccgccg cggccccgcg
      541 cacgcccagc cgcgtcgccc ggggccgcgc acgcacccgt ggcctaggcg tcgcgcctcc
      601 cgccgggggc ggcgcggggg caaggctgcg ctcacctccc cgtggccccg gggcggcccg
      661 ctcctcctcc cgcccgcccg gcgtccccgc gcactagctc agcgtcccac gttccagcag
      721 ccctgggaca gcgccttcct acgccggcgc ccggtccccg tgccgccctc gctctccagc
      781 gaggccccgg cggccccagc cctcccctga gcttttgggt tttaaactag tcccatctat
      841 cacttactac ctgcctatcg cccagcacca actgttgcaa gttccgcagc attgcttctc
      901 gcaacttctg ggtcgaaact gcccctcccg ggggcgcctt ggaggagcag aatgcccgga
      961 tgcccttgga ggcactgagc ccggaggttt tcaaagccag aagcccagac aagtcagatt
     1021 gcacagcaga aggtatgggt caacagaagc agcaggcaca agccaggaga caagtttcca
     1081 attcccaaca caatgctatg tccaccaccc cactgtacat ctctgtctct acttcattta
     1141 tttaaagttg gaaaccaact tataactgac tcttcatgat gcttttttgg aaagacaata
     1201 tagtgggttg caacaataat acaaattgtt atggttcgag tgtgaatgac tcccacagac
     1261 tcatgtattt ggacacatgg tcctcagctg gttgacctgg tttggaatgt ggtagaagtt
     1321 tttggatgtg ctccatagct gacagatctt gggctatagt gggatgtctt gaggacgaca
     1381 atctggccca gcttctgcct tgaactctgt gcttcttggt gggtgccgtg gactaagtag
     1441 ctgccgcaga cttctgccct cacagagaaa ctcccactgt gccttccttg ctgtgacata
     1501 ctgtccatcg tatgctcttc cctctaattg tgagctagaa taaacctccc cttaagttgc
     1561 tggctcacat attctgtcac cgcaatgaaa gaaaaaacaa tctagaagag taggatccat
     1621 gtggctctta ggtttcatag tcggtttgca agaagaatgt ggaatcgttt ggagctatgg
     1681 gctggagagg cctggagtgc cgtgtacaga gctcaagagg gtattctggt gggagttagg
     1741 aagttcaaaa tgggggttgg ggatttagct cagcggtaga gcacttgcct agcaagtgca
     1801 aggccctggg ttcggtcccc agctccaaaa aaaaaaaaaa aaagaaaaaa aagaaaaaag
     1861 aaaagaaaag gaagttcaga atgtcataaa agggcaacag tgttcactcc gctcatgagg
     1921 tttcagagga aaacaagggt ccttttggaa aatgggccag aggctatttg agttatagtc
     1981 tggcaaaaaa tctggctgca tctgcctata tcccgaaaac ttgagaaatg ctcagattta
     2041 aaataatgga tggatttgtt tgataaaagg aaatccaagg tagcatataa gtcactgctc
     2101 acttccatta gcaggtttac agtgagaatt ctcagcagag gatgtgggga tgtgcatttt
     2161 gatctgggcg gggttgtaaa caacaaatag agctgctgga aagtggagat agttgtcaag
     2221 ttaagatgta attgtacact gacagagaag cctacaaccc tgtccagcag caatgggaat
     2281 ggtgcctaga gggtagcctc tgcccatgga agactccagg atgccatgcc ccaatagcac
     2341 catctaagaa aacgtttccc ccagtccaac cactcaagca catagaggcc tctcaactgc
     2401 agttccaggg agccagacta catcttgagt ggctattaga actcattttt tttgtctgca
     2461 cagtgctaat tttgcagaca tatagaatac aaaagttaca ggtgtataaa ctgatgatgt
     2521 gaccacttca tgttgagggg gaggttttta ttgtagatga gagaaagaac agctgggcac
     2581 gactgtcaga gtccagagca gagagagaga gagagagaga gagagagaga gagagagaga
     2641 gagagagaat tgaacttggg cagatctggc ccaagcagga gcagagagca gggaaaggga
     2701 gagggaggag ggagacagtg tggtggtttg aataggaatg gcccccaaga cttgtgtgtt
     2761 tcaatggctg taaggagtgg aaccattaag aagtggggcc ttgttggagg aaacgtgtca
     2821 ctatggaggt gggctctaag gtcttatatg ctcaagctac acccagtgta gcttctgcag
     2881 cctgcagaac aagttgtaga actctaacct caggctgaag agatggctta gtggttaaga
     2941 gcactgactg ctcttccaga ggccctaagt tc
//
