LOCUS       XM_039098178            1866 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DNA-directed RNA polymerase II subunit
            GRINL1A-like (LOC120098580), mRNA.
ACCESSION   XM_039098178
VERSION     XM_039098178.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1360              JACYVU010000312.1  377146-378505
            1361-1361           "N"                1-1
            1362-1866           JACYVU010000312.1  378506-379010
FEATURES             Location/Qualifiers
     source          1..1866
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1866
                     /gene="LOC120098580"
                     /note="DNA-directed RNA polymerase II subunit
                     GRINL1A-like; The sequence of the model RefSeq transcript
                     was modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 4 Proteins, and 93% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120098580"
                     /db_xref="RGD:41078009"
     CDS             560..1648
                     /gene="LOC120098580"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: DNA-directed RNA polymerase
                     II subunit GRINL1A-like"
                     /protein_id="XP_038954106.1"
                     /db_xref="GeneID:120098580"
                     /db_xref="RGD:41078009"
                     /translation="MCSLPLGFEPPVPEDLGHQRLAELQERLRHQERLLRKEKFICKL
                     SDKGKQISDTTAKLRAAISESEEVRGRTELLHPVSVDCKLRHKATTRVDTDIDKAQNS
                     DLMLDTSSLVPECWSVDIESSKTTSEIQGPTQLTHKGNEETLETGCTVNNSLSVCITA
                     QAPSSEVNEHLPQHSSQAEEISSSVDSLFITKLQKITTADQTEPSEENTSTENFPELQ
                     SETPKKPHYMKVLEMRARNPVPPLHKFKTNVLPTQQSDLPSHCQRAQSPXEEQRHRAR
                     QHLDDVTAARLLLLHHLPAQLLSIEESLALQKEQKQNYEEMWAKLAAQKLAERLNITK
                     QSYNPEGESSGRYREVRDEDDAQSSDEC"
ORIGIN      
        1 gcaatcatat ggtagatcaa ttagtggcat ttgctacccc agaagaaaac agtcataatc
       61 atgccaatac aggatatttg catattaaat ataaggttct ctattctgaa gccaaacaaa
      121 ttattgctaa ttgtcctatt tgtaagcctt cacttataaa atgtattcca tctgaaatta
      181 atcccagaag aatgcaacct aatacatcgt ggcagatgga tggaacccat atttctgagt
      241 ttggtcgcct ttcctagata catgtaagca tagataattt ttcaaaattt gtatgggcta
      301 caccattgcc aggagtacgc actgctcatg ttatacagca tctattggaa acttctgctg
      361 ttatgggacc gccttctaaa attaaaactg ataatggacc aacatatatt tcttatcaat
      421 ttaaacaatt ttgtcggctc ttccgggaaa atggcgactc ctgcacgtgt tccagagttg
      481 ctgccttcca aggagcctga gacctccatg ggcccggctg gggaaccctg cctgcggggc
      541 caccctcagc ccatgcataa tgtgctccct gcccctcggc ttcgagcccc cagttcctga
      601 ggacttgggg catcagagat tggcagagct gcaggagagg ttgaggcacc aggagagact
      661 tttgcgcaaa gaaaaattca tttgcaaatt gtccgacaaa ggtaaacaga tctcagacac
      721 cactgccaaa ctgagagctg ccatttcaga aagtgaagag gtcagaggga gaactgaact
      781 acttcatcct gttagtgttg actgtaagct aaggcataaa gcaaccacaa gagttgatac
      841 cgacatagac aaggcccaga attctgacct gatgcttgat acttcatcat tagttcctga
      901 atgttggtca gtagacattg aatcatctaa aacaacctca gaaatacagg ggcctacaca
      961 gctcacccac aaaggcaatg aagagacttt ggagactggc tgcacagtga ataacagcct
     1021 gtctgtctgc atcacagccc aggctccctc atctgaagtt aatgaacatc tcccccagca
     1081 ttcaagtcaa gcggaagaga tttccagcag cgtcgacagt ctgtttatca ctaaattgca
     1141 aaagatcaca actgcagacc agactgaacc ctcagaagaa aacaccagca ctgagaactt
     1201 tccagaactg cagagtgaga ctcctaagaa gcctcattac atgaaagtgc tagaaatgcg
     1261 agctagaaac ccagtgcctc ctcttcataa gtttaagacc aatgtgttac ccacacaaca
     1321 gagtgactta ccaagtcatt gtcagagggc tcagtctcct ncagaagagc agcgacacag
     1381 ggctaggcag catcttgatg atgtcacagc agctcgcctt cttctgctcc accacctgcc
     1441 tgcacagctg ctctccatag aagagtcgct ggctctgcag aaagagcaga agcagaatta
     1501 tgaggagatg tgggcaaagc tcgcagcaca gaaactagcc gagagactga atattacaaa
     1561 gcagagctac aatccagaag gggagtcttc agggagatac cgagaagtga gggatgaaga
     1621 tgatgcccag tcctcggacg aatgctgaaa atgagcgctg ggagatcctg ggagttgact
     1681 gttgagctta cattgtctca tcgaacttcc taacaagtac caagacagtg tcagaccttg
     1741 ttgagggaca gcagtttttt aagttacaca aaagtagcta caaaataaga atccagtttg
     1801 tctttcagaa gatgatgttt acatgcttga acagttcaat atttgaacat tgggtttggc
     1861 tgtatt
//
