LOCUS       XM_039097441             865 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus kallikrein-2-like (LOC120098457),
            mRNA.
ACCESSION   XM_039097441
VERSION     XM_039097441.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 9% of CDS bases
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-46                JACYVU010000033.1  18395102-18395147
            47-156              JACYVU010000033.1  18396288-18396397
            157-208             JACYVU010000033.1  18396399-18396450
            209-272             JACYVU010000033.1  18398043-18398106
            273-342             JACYVU010000033.1  18398330-18398399
            343-343             "N"                1-1
            344-559             JACYVU010000033.1  18398400-18398615
            560-692             JACYVU010000033.1  18398728-18398860
            693-865             JACYVU010000033.1  18408846-18409018
FEATURES             Location/Qualifiers
     source          1..865
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..865
                     /gene="LOC120098457"
                     /note="kallikrein-2-like; The sequence of the model RefSeq
                     transcript was modified relative to its source genomic
                     sequence to represent the inferred CDS: inserted 1 base in
                     1 codon; deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 11
                     Proteins, and 16% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:120098457"
                     /db_xref="RGD:41389408"
     CDS             1..852
                     /gene="LOC120098457"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: kallikrein-2-like"
                     /protein_id="XP_038953369.1"
                     /db_xref="GeneID:120098457"
                     /db_xref="RGD:41389408"
                     /translation="MWFLVLCLMLSLGEYGAFPLIQSSTIGGWEWERHSQPWQVAVYH
                     YVRAVRGGCVLVQPQWELTAAHCIPAQNCRHMPLNLIGISVPKVKVSKSKVRLGQHSL
                     DDDGDTGQYVPVXHSVPHPLCNRSLRMPTFLSPDADNSQDLMLLQLREPANTTEAVRV
                     TEEPTEEAKLGSRCLASGWGSTRPDKSLSAKILQCVDLTLMASDVCTYAYSQRVTEFM
                     LCAGHQEGSKDTCQGDSGTTLLCDRMLQGITSWGGNPCAYPKKPSIFTKVSKHMSWIK
                     ANLQITP"
ORIGIN      
        1 atgtggtttc tggttctgtg cctcatgctg tctctggggg aatatggtgc ctttcccctc
       61 atccagtcca gtaccattgg aggttgggag tgggagagac attcccaacc ctggcaggtg
      121 gctgtgtatc actatgtcag ggctgtcagg ggtggttgtg tcctggtcca accgcagtgg
      181 gaactcacag ctgcccactg catcccagct cagaattgca ggcacatgcc actcaacctg
      241 attggcatct cagttcctaa ggtcaaagtc agcaaaagca aggtgaggct gggtcaacac
      301 agcctggatg atgatggaga cactggccag tatgtccctg tcngacattc tgtcccacac
      361 ccactctgta acaggagcct ccggatgccc acgtttctca gcccagatgc tgacaacagc
      421 caggacctga tgctgcttca gctgagggag ccagccaaca ccacagaggc tgtgagggtg
      481 actgaggagc ccactgagga ggctaagctg gggagccgct gcctggcatc cggctggggc
      541 agcaccaggc cagataagtc tctaagtgca aagatactgc agtgtgtgga cctcaccctc
      601 atggccagtg atgtctgtac atacgcttat tcacaaaggg tgacagaatt catgctgtgt
      661 gctggacacc aggaaggcag caaagatacc tgtcagggtg actctggaac cacactcctc
      721 tgtgatagga tgctccaagg gattacatca tggggtggta acccctgtgc ctatcctaag
      781 aagcctagca tattcaccaa agtgtcaaaa cacatgagct ggatcaaggc caacctacag
      841 atcaccccat gaggaccctg ccttc
//
