LOCUS       XM_039097387            1233 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ATP synthase F(0) complex subunit C1,
            mitochondrial-like (LOC120098314), mRNA.
ACCESSION   XM_039097387
VERSION     XM_039097387.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097387.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 19% of CDS bases
            internal stop codons :: corrected 2 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1233
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1233
                     /gene="LOC120098314"
                     /note="ATP synthase F(0) complex subunit C1,
                     mitochondrial-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 6 Proteins, and 83%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:120098314"
                     /db_xref="RGD:41288194"
     CDS             1..498
                     /gene="LOC120098314"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 2 bases at 2
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:181..183,aa:OTHER)
                     /transl_except=(pos:202..204,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: ATP synthase F(0) complex
                     subunit C1, mitochondrial-like"
                     /protein_id="XP_038953315.1"
                     /db_xref="GeneID:120098314"
                     /db_xref="RGD:41288194"
                     /translation="MCEMAISGFSGDSVTSYDVLLKQTQGRGILQKQTTKALIISLVL
                     IHSYTRGLIRPVSASPXVDQRPIXKPLYSSSLPQVDRWKFQTSVISQGINTAAKFIGA
                     GAATVGVAGSGTGIDTVFSSLVIYYARNPSLKQQLFYAILGFALSEATGLLCLTVAFL
                     ILFTM"
ORIGIN      
        1 atgtgtgaaa tggcaatttc tggtttctct ggagactcgg ttacgtcata tgacgttttg
       61 ctgaagcaga cacaggggag aggtatcttg cagaagcaga ccaccaaggc actgatcatt
      121 tctttagttc tgatccactc ctataccagg ggtctaatta ggcctgtgtc tgcctccccc
      181 tgagtagacc agaggcccat ttaaaagccc ttgtatagca gctctctgcc ccaggtggac
      241 agatggaaat tccagaccag tgttatttcc cagggaatca acacagcagc caagtttatt
      301 ggagctggtg ctgccacagt tggtgtggct ggatcaggga ctggcattga cacagtgttt
      361 agtagcttgg ttatttacta tgccaggaac ccatctctca agcaacagct cttctatgct
      421 attctgggtt ttgccctatc tgaggccacg gggctcttgt gtttgacagt tgctttcctc
      481 atcctcttca ccatgtgagg ctccataggg tcacccagtc gtccttacag gtttgactcc
      541 atgtcagtcc tggtgctgga gtgtgctgag ctttatcatt aaacagaaat gtttttctaa
      601 accataaaaa accttaaaat agtctttata aaaataatag aggtctttaa agaggaaatt
      661 aataaattca ttagagaaat ctatgagaac acaaacagtg gaagaaatga ataaaatagt
      721 tcaagacctg caagtggaaa tagaatcaat aaagaaaaca agagaaattg ggaaataaaa
      781 acgtttagaa accagaacag gaatctcaga agcaaagctc accaacagaa tacaagagat
      841 agaagaggga agttcagtca tagaagatac aataaaagac atgggcactt cagtcaataa
      901 aaatgttgaa tctaaaaata tcctggcaca aaacatccag gaaatatagg acactctgat
      961 caatctagaa taataagaat agaggaagga ggagaaccag gtcaaagtca cagaaaacat
     1021 tttcaacaaa atcatagaaa aaatttccct aaagaaggag atgtctatta agatacaaga
     1081 agcatgcaga ctaccaaata gaacagacca gaaaagtaag ttctcttagc acataatatt
     1141 caaaacacta accatgaaga acaaagaaag aagccatgta atggtggcac atgcccttaa
     1201 tctcagcact caggaggcag aggcaggtgt atc
//
