LOCUS       XM_039097374            2735 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 850-like
            (LOC120098303), partial mRNA.
ACCESSION   XM_039097374
VERSION     XM_039097374.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the 5' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1188              JACYVU010000298.1  405654-406841
            1189-1435           JACYVU010000298.1  406843-407089
            1436-1797           JACYVU010000298.1  442185-442546
            1798-2735           JACYVU010000298.1  442638-443575
FEATURES             Location/Qualifiers
     source          1..2735
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            <1..2735
                     /gene="LOC120098303"
                     /note="zinc finger protein 850-like; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 23
                     Proteins, and 71% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:120098303"
                     /db_xref="RGD:41186084"
     CDS             <1..2475
                     /gene="LOC120098303"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:1423..1425,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: zinc finger protein
                     850-like"
                     /protein_id="XP_038953302.1"
                     /db_xref="GeneID:120098303"
                     /db_xref="RGD:41186084"
                     /translation="FLCKSHLFHSSSSQESPDSPPERIQSSTLKGHYRISTQETTFKC
                     NECEKIFTQFLRLKAHHRIHARDKPYKYNQWEESLTGLSNLHIHHRFHTGDKPYKCNK
                     CGKSFTCSSSLKIHHRIHIGEKPYRCNECGKSFTQSSGLKIHHRIHTGDKPYKCKECG
                     KSFTESSSLKVHHRIHTGEKPYKCNECGKSFIKYSKLRTHHRTHTGDKPYKCNECGKS
                     FTQSSSLKTHHRIHTGEKPYKCNECGKSFTQSLALKFHHRIHTGNKPYKCNGCGKSFI
                     NSLSLQNHHRIHTGEKPYKCNECGKSCTWSSGLKIHHRIHTGDKPYKCNECGKSFTES
                     SSLKIHHRIHTGEKPYKCNECGKSFTESSSLKTHHRTHTGDKPYKCNQCGKSFTQSSN
                     LKTHTKIHAGDKPYKCTECGKSFTQSSALKVHHRIHTGNKSYECNGCGKSFTHSLSLQ
                     IHYSIHTGEKPCKCNECGESFTDYXSHKSLSNLHIHHRFHTGDKPYKCNKCGKSFSCS
                     SGLKIHHRIHTGEKPYRCNECGKSFTWSSGLKIHHRIHTGDEPYKCNECGKSFTKSSS
                     PKIHHRIHTGEKPYKCNECGKSFTQSSNLFFFLSSNLKTHHRIHAGEKPYKCNECGKS
                     FTKSSGLKVHHRIHTGNKPYECNGCGKSFTNSLSLQNHHRIHTGEKPYTCNECGKSFT
                     QSSNLKIPHRIHTGEKPYKCNECGKSFTESSSLKTHHRTHTGDKPYKYNECGKSFTKS
                     SNLKTHHRIHAGDKPYKCNECGKSFTKSSNLKVHHRIHTGNKPYECNGCGKSFTHSLS
                     LQIHHRIHTGDKPCKCNECGESFTDY"
ORIGIN      
        1 tttctttgca aaagtcatct gtttcattcc tcaagcagcc aggaatctcc agattctcct
       61 cctgagagaa ttcagtcctc aacacttaag ggtcactaca gaatttctac tcaagagaca
      121 actttcaagt gtaatgaatg tgaaaaaatc tttacacagt tcctaagact taaagctcat
      181 cacagaatcc atgccagaga caaaccttac aaatataacc aatgggagga atccttaaca
      241 ggtctctcaa atcttcatat tcatcacaga tttcatactg gagacaaacc ttacaaatgt
      301 aataagtgtg ggaaatcttt tacatgctcc tcgagtctta aaattcacca cagaatccat
      361 ataggagaaa aaccttacag atgtaatgaa tgtgggaaat cttttacaca gtcttcaggt
      421 cttaaaattc accacagaat acacactgga gacaaacctt acaaatgtaa agaatgtggg
      481 aaatctttta cagagtcttc aagtcttaaa gttcaccaca gaatccatac aggagaaaaa
      541 ccttacaaat gtaatgaatg tggtaaatct tttatcaagt actcaaaact cagaactcac
      601 cacagaaccc atactggaga caaaccttac aaatgtaatg aatgtgggaa atcttttaca
      661 cagtcttcaa gtcttaaaac tcaccacaga atccatacag gagaaaaacc ttacaaatgt
      721 aatgaatgtg ggaaatcttt tacacagtct ttagctctta aatttcacca tagaatccat
      781 actggaaaca aaccttacaa atgtaatgga tgtggaaagt cttttataaa ctccttaagt
      841 cttcaaaatc accacagaat ccatacagga gaaaaacctt acaaatgtaa tgaatgtggg
      901 aaatcttgta catggtcttc aggtcttaaa attcaccaca gaatacatac tggagacaaa
      961 ccttacaaat gtaatgaatg tgggaaatct tttacagagt cttcaagcct taaaattcac
     1021 cacagaatcc atacaggaga aaaaccttac aaatgtaatg aatgtgggaa atcttttaca
     1081 gagtcttcaa gtctcaaaac tcaccacaga acccatactg gagacaaacc atacaaatgt
     1141 aatcaatgtg ggaaatcttt tacacagtct tcaaatctta aaactcacac aaaaatccat
     1201 gctggagaca aaccttataa atgtaccgaa tgtgggaaat cttttacaca gtcttcagct
     1261 cttaaagttc accatagaat ccatactgga aacaaatctt acgaatgtaa tggatgtgga
     1321 aaatctttta cacactcctt aagtcttcaa attcactact caatccatac aggagaaaaa
     1381 ccttgcaagt gtaatgaatg tggggaatct tttacagact actgaagtca taaaagtctc
     1441 tcaaatcttc atattcatca cagatttcat actggagaca aaccttacaa atgtaataag
     1501 tgtgggaaat ctttttcatg ctcctcgggt cttaaaattc accacagaat ccatacagga
     1561 gaaaaacctt acagatgtaa tgaatgtggg aaatctttta catggtcttc aggtcttaaa
     1621 attcaccaca gaatacatac tggagacgaa ccttacaaat gtaatgaatg tgggaaatct
     1681 tttacaaagt cttcaagtcc aaaaattcac cacagaatcc atacaggaga aaaaccttac
     1741 aaatgtaatg aatgtggcaa atcttttaca cagtcttcaa atcttttttt ttttttgtct
     1801 tcaaatctta aaactcacca cagaatccat gctggagaaa aaccttacaa atgtaatgaa
     1861 tgtggcaaat cttttacaaa gtcttcaggt cttaaagttc accatagaat ccatactgga
     1921 aacaaacctt acgaatgtaa tggatgtgga aaatctttta caaactcctt aagtcttcaa
     1981 aatcaccaca gaatccatac aggagaaaaa ccttacacat gtaatgaatg tggcaaatca
     2041 tttacacagt cttcaaatct taaaattccc cacagaatcc atacaggaga aaaaccttac
     2101 aaatgtaatg aatgtgggaa atcttttaca gagtcttcaa gtctcaaaac tcaccacaga
     2161 acccatactg gagacaaacc atacaaatat aatgaatgtg ggaaatcttt tacaaagtcc
     2221 tcaaatctta aaactcacca cagaatccat gctggagaca aaccttataa atgtaatgaa
     2281 tgtgggaaat cttttacaaa gtcttcaaat cttaaagttc accatagaat ccatactgga
     2341 aacaaacctt atgaatgtaa tggatgtgga aaatctttta cacactcctt aagtcttcaa
     2401 attcaccaca gaatccatac aggagacaaa ccttgcaagt gtaatgaatg tggggaatct
     2461 tttacagact actgaagtca taaaagtcac aacaggttac atactggaga aaaaacattt
     2521 aaatgaaatc actgtagaat atcatttacc cagtcctcaa atctttaagt tcagtataga
     2581 atctagagaa gagataatct tcactaatga aaaaagttgg caagtctttt cctggttctc
     2641 aactcttcaa attcatcaaa gaatccatcc tggaaagcag ccttataagt ataatgaatg
     2701 tgagaaatac ttttcctgtt cctcacctct tcaag
//
