LOCUS       XM_039097371            5260 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protocadherin alpha-7-like
            (LOC120098301), mRNA.
ACCESSION   XM_039097371
VERSION     XM_039097371.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 1% of CDS bases
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-5158              JACYVU010000299.1  18074202-18079359
            5159-5260           JACYVU010000299.1  18079361-18079462
FEATURES             Location/Qualifiers
     source          1..5260
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5260
                     /gene="LOC120098301"
                     /note="protocadherin alpha-7-like; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 18
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:120098301"
                     /db_xref="RGD:41330336"
     CDS             2876..5260
                     /gene="LOC120098301"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:5180..5182,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: protocadherin alpha-7-like"
                     /protein_id="XP_038953299.1"
                     /db_xref="GeneID:120098301"
                     /db_xref="RGD:41330336"
                     /translation="MLCLGGALPEGRFLVLSLLLLAVWEVGSGQLRYSIPEETKHGTF
                     VGRIAQDLELQLPELVPGLFQLDSKGFGDLLEVNLQNGILFVNSRIDREELCGRSAEC
                     NIHLEVIVDRPLQVFHVEVEVRDINDNPPTFPATQKTLFIPESRLLDSRFPLEGASDA
                     DVGSNALLTYRLSTNEHFSLDVPPNHEQVKPLGLVLRKPLDREEAAEMRLLLTATDGG
                     KPELTGTVQLLITVLDVNDNAPAFDRSLYTVKLPENVPNGTLVIKVNASDLDEGVNGE
                     VMYSFSSDVSSDIKSKFHVDAVSGEITAIGIIDFEECKAYKIPLEARDKGFPPLIGHC
                     TVLVEVVDANDNAPQLNVKTLWLPVKEDAQLGKIIALISVIDLDSGANGQVTCSLANH
                     VPFKLVSTFKNYYSLVLDSALDRETTADYQVVVTAQDGGSPSLRATATVSVEVADVND
                     NAPLFAQPEYTVFVKENNPPGTHIFTVSAVDADAQENALVSYSLVERRVGERLLSSYV
                     SVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDENDNMPTLL
                     GSGTGGSDGVFNHLLPRSVDPGHVVAKVRAVDADSGYNAWLSYELLSLPGSMRSPFRV
                     GLYTGEISTTRSLDETDGTRQRLLLLVKDHGEPQLTATVTMLVSLVESGQAPKASSRS
                     SVGVSVPESSLVNVNVYLIIAICAVSSLLVLTLLLYTALRCSAMPTGGACGSGKPMLV
                     CSSAVGTWSYSQQRQQRVCSGRAYRRPTXWPSAPVYLHVLDLQNHLFLWTPLRR"
ORIGIN      
        1 tttatattta gaaacattta attcatagaa attttgtgac tcctttcatg gtattgcaca
       61 tttgcacatg ttattgtcaa aattcaatac tattctagcc acaattttta cttgatttat
      121 tatttttgtg ttgttgtaca tttatctatc tatctatcta tctatctatc tatctatcta
      181 tctatctatc tatttaacat ctgagatact acatcttcat gttggcttga tactcttgag
      241 ttcaagtgac atatcacatg ctggttattc gtacaccgca atctttgtcg ttcaaggcgt
      301 cacaagcaat ttcgtattgt gtggagtact gcttttagcc tttgtgtgag ttcagtcttc
      361 tagatcagaa ttgtggtgac atccgtggga atgcattcct ccgagcattt acatttcaca
      421 attattctct gagcttttga tatattttgt agtattatcg ggaaggcata tcttccattt
      481 atgctacaac agtcaatttc acgagtttgg tttatcatct tatttgttca ttttagatct
      541 cttagtttca agatgttgta acatttatta ctcttttaaa ccttttagtc ataagatgca
      601 gaatgatttc cttctttctt tttttgaagc agggtatcta tcatgtattt cagtttaaca
      661 taaacctcac agtcctcctg tttcagtccc tgagttctga gatctggcaa tttccaccat
      721 ttcaagtttg tttttgtttg tttgtttcgt ttactggtat ggaagcttta cattattttc
      781 agtactttaa tatttttttt tgagcatcat tggctggtcg atcgttgctc ttattctgat
      841 aaagctctgc tgaagcagag tcagtgatac agttcaatcg tgttggtctc catatgagtt
      901 gattatttta caaaaaaacc tttcatagca ggctcatggg cccaagttca gaatctagca
      961 cctctccccc aaaaaatcta cattacgttt acacctaata tggtttaaga aaataataaa
     1021 gaccaagaat acagtatata ataattctac tgttgttgat agatgtgtaa tttataaatc
     1081 attataaaga tactcaaaat gttgaagatg ttttatttta cacagaaata tttttctttt
     1141 tgaaagtaaa tctgtcgaaa gtttgagcta ctttcctggt ttttcaacgt ttaaattcta
     1201 gaattccttt tctccctttg cttcctgagt gtgttttatt tgccccgaca atatatactt
     1261 attagatatt aagcacattt cttagaaaag aattgttaga tttaatgaat gtgaatttga
     1321 ggtttctgga actctggact cttatagcat gttagcaata taatgacacc acataatcat
     1381 ttataagtag attttatcct tttccccaac tcaaatgaat caaaaagcaa gaattttatg
     1441 tggttgcctt catatttttc ataattcctg tctacgcctg tcatctatct atcaaaatgt
     1501 tctatataga atgatttact ttagctctca gttctaaaga ctttcagcct tcggtatgcc
     1561 tatgcttata acactatttg aacagtgtgc agcctcttct ttttggaaat gactttatat
     1621 ttactattat gatgacatct acttggctct cagatgtgac ttgaccataa tctcctccta
     1681 aattttagct gtttttacaa aacataaata gcattcaaag ttctttatgt catctaactg
     1741 tatttggcac ctaatcactt taaacatcat ctataatttt catcatcaaa atgtccatca
     1801 ttttactttt agacccccca atggattaat aatagattta atcaatcatc aatcaattga
     1861 tcgatcaatt aatcatgttt gagtgggaga ctagaactca aaagagagtg gttcttaatt
     1921 agaacctagg tagaaaagaa ttgtaagcat aagtttaaaa tagaactctt cccaaactct
     1981 gaatgaacaa tactgaagat gaaatgtaca atgggatgat acagtaaatg ttgtacaaga
     2041 gagaagaaga cattgatctt cacataagac aatagttgaa agcaatcgta tcctgaaggt
     2101 gcaggaataa aacatgatgg tggggacagg ctatgtaaat attaataaaa agaaatatat
     2161 tttctcccca caaaggttgt tctcctagat tctattttaa aaatacttta tacattgaca
     2221 gtttatggaa ttacatagga aaagtactcc atctgcatat atttactgat atctttcatc
     2281 cagcagaaaa aagtttattt tgatcagtaa atttctgggt gcctagcttt gctaggcatc
     2341 atgggtctat tatgtcagga tcaaaaattc aggaatgtgg atgtccctga gttacagaac
     2401 gaaaacgttt ttcgaattta atatttgtga ttatgtacct catcgtttta aattgccact
     2461 caattttcat cattatttta aaattttgtg gacagtttcc ccaggaacaa gagaactgta
     2521 attatgtatt tcataatttt agaggtcagt cctctaatag tacctccagg aagataaagg
     2581 tggttttcta tttcaacaat gataaaattc agaggataaa ataaggttca acggttcagt
     2641 gtccaatcgc cgaatatgta cttactcttt gaggccgcct gatgtcgctc tcggccgctt
     2701 tattcgttct gattaaaaga ctggtatagc catccttttt ccagcagaaa agacgctcca
     2761 ttcttattta ctttgatgag caatggtgaa cacgggaggg aggaattgag agaatcagtt
     2821 ggcatctctt catttggaag taatttaagc gaactggaag tatcaagctc ctgaaatgct
     2881 gtgtttaggc ggtgcactcc cagagggacg gtttctagtg ctttcgcttc tgctcctcgc
     2941 agtttgggag gtggggagcg gacagctccg ctactctata ccggaggaaa ccaaacacgg
     3001 caccttcgtg ggccgcatcg cacaggacct ggaactgcag ctgccggagc tggttcctgg
     3061 tcttttccag ttggactcaa agggttttgg ggaccttctg gaggtaaatc tgcagaatgg
     3121 cattttgttt gtgaattctc ggatcgatcg ggaggagctg tgcgggagga gcgcggagtg
     3181 caacatccac ctggaggtga tcgtggacag gccgctgcag gttttccacg tcgaggtaga
     3241 ggtgagggac attaatgaca accctcccac gtttccagcg acacagaaga ctctgtttat
     3301 tccggagtcc agactgcttg actcgcggtt tccactagag ggcgcgtcag atgcagatgt
     3361 cggttccaat gccctgctga cttacagact gagcaccaat gaacatttct ctctggatgt
     3421 accgcccaac cacgagcagg tgaaacctct tgggctcgtt ttgcggaaac ctttagacag
     3481 agaagaagct gcagagatgc gcttattgct cacggctacg gacggaggca aaccggagtt
     3541 gaccggcacc gttcagttac tcatcacagt gctggatgtc aatgacaacg ctccagcttt
     3601 tgacagatct ctgtataccg tgaaattacc agaaaacgtt ccaaacggga cattagtaat
     3661 caaagtcaat gcctcagatt tggacgaagg cgtcaatggg gaagttatgt actcattttc
     3721 tagtgatgtt tcttcagata taaaatccaa gtttcacgtg gatgctgtga gtggcgagat
     3781 tacagctatc ggaattattg attttgaaga gtgcaaagct tacaagattc cattagaggc
     3841 acgtgataag ggcttcccac cactgattgg tcactgtact gttcttgtgg aagttgtcga
     3901 tgctaatgac aatgccccac agctcaatgt caaaacactc tggctccctg ttaaagaaga
     3961 tgcgcagctg gggaaaatta ttgccctgat cagtgtgatt gatctagact caggtgccaa
     4021 cgggcaggtt acctgctcct tggctaatca cgtccccttc aagctggtgt ccaccttcaa
     4081 gaattactat tcgcttgtgc tggacagcgc cctggaccga gagaccacag ctgactatca
     4141 ggtggtggtg actgcgcagg acgggggttc tccctcgctg cgggccacgg ccaccgtttc
     4201 tgtggaggtg gctgatgtga acgacaatgc gcccctgttt gctcagcctg aatacacagt
     4261 gtttgtgaag gagaacaatc caccaggtac gcatatcttc acggtgtctg cggtggatgc
     4321 agatgcacaa gagaatgcgc tggtgtccta ctcgctggtg gagcggaggg tgggcgagcg
     4381 cttgctgtcg agctatgtgt ctgtgcatgc ggagagcggc aaggtgttcg cgctgcagcc
     4441 tctggaccat gaagagctgg agctgctgca gttccaggtg agcgcgcggg atgctggtgt
     4501 gcctgccctg ggcagcaatg tgactctgca ggtgtttgtg ctggatgaga acgacaacat
     4561 gccgacgttg cttggatctg ggacgggtgg ttcagatgga gtgttcaatc atttgttgcc
     4621 taggtcggtg gatcctggtc acgtggtggc gaaggtgcgc gcagtagatg cagactctgg
     4681 ttacaatgct tggctgtctt acgagctgct ctcattgcca gggagcatgc gcagcccatt
     4741 ccgtgtagga ctatacaccg gtgagatcag caccacaagg tccttggacg aaacagatgg
     4801 gactagacaa cgtctgctgc tgctggtgaa ggaccacggt gaacctcagc tgactgccac
     4861 agtcaccatg ctggtgtctt tagtggaaag tggccaggcc ccaaaggcct cgtcccggtc
     4921 ctctgtgggt gttagtgtac cagagtcatc gttagtgaat gtcaacgtgt acctgatcat
     4981 tgccatttgc gcagtgtcca gtctattggt gcttacgctg ctgttgtaca ctgcgctccg
     5041 ctgctcggcg atgcccactg ggggcgcttg tgggtctggg aagcccatgc tggtgtgctc
     5101 cagcgcggtg ggtacctggt cttactcgca gcagagacag cagagggtat gctctggaag
     5161 ggcctaccga agaccgacct aatggccttc agccccggtc tacctccatg tcctggatct
     5221 gcagaaccat ctgtttcttt ggactcctct gagaaggtga
//
