LOCUS       XM_039097307            2010 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus MLV-related proviral Env
            polyprotein-like (LOC120098200), mRNA.
ACCESSION   XM_039097307
VERSION     XM_039097307.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097307.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2010
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2010
                     /gene="LOC120098200"
                     /note="MLV-related proviral Env polyprotein-like; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 13 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120098200"
                     /db_xref="RGD:41276979"
     CDS             22..1908
                     /gene="LOC120098200"
                     /codon_start=1
                     /product="MLV-related proviral Env polyprotein-like"
                     /protein_id="XP_038953235.1"
                     /db_xref="GeneID:120098200"
                     /db_xref="RGD:41276979"
                     /translation="MESSAHSKPLKVKTPTWLLLVLLWPRVSGGISPHHIYNITWIVT
                     NLMTGRLANATSVRGTLADAFPPLYFDLCDVIDYKWEPGTTHNWHPSTTYYGCGPASH
                     SKEIYVCPGHRVSRQCGGPGSGYCAQWGCETTGDAYWKPSSSWDLITLKRDGRPPYTL
                     CKRDAKCNPLVLHFTDSGRRATWDGPKSWGLRLYVTGTDPVGLFSLNRQVSPLATRPI
                     GPNPVLPDQKPPSLPAQAQPPSLPKVTQAPGSTPTSPFSTTGGSTILISPSPGTGDRL
                     FNLVAGAYLALNYSDPFRTQECWLCLVSGPPYYEGVAVIGNYTNLTAAPDSCANTPSH
                     RLTLPEVSGRGLCLGNVPPTHQTLCNTTQKIPIGNYFLAAPKGTYWACNTGLTPCISA
                     TVLNQSSDYCVLVEIWPKVTYHESEYIYSFFEKQTRFRREPATLTLALLLGGITLGGV
                     AAGIGTGTTALIETGHFRQLQAAMNADLKAIEESVSALEKSLTSLSEVVLQNRRGLDM
                     LFLREGGLCAALKEECCFYADHTGIVRDNMAKLRERLAQRQKLFDSQQGWFEGWFNRS
                     PWFATLLSTLMGPLLILLLILLFGPCILNRLVQFMRDRLSVIQILVLTQQYHRLRQQE
                     TEIS"
ORIGIN      
        1 tcacaacact acaccccaga catggagagt tcagcgcact ccaaacccct taaagttaaa
       61 actcctacgt ggctcctcct agtccttttg tggcctagag tcagtggggg aataagcccc
      121 caccacattt ataacattac ctggatagtc actaatctca tgacaggaag gctggctaat
      181 gctacctccg taagggggac actggccgat gccttccctc ccttatactt tgacctttgt
      241 gatgtgatag actacaagtg ggagcctggc actacccata attggcatcc ctcaaccacc
      301 tactatggtt gcggtccggc ttcccacagc aaagagatct acgtttgccc tggacacaga
      361 gtgagccggc agtgtggagg gccggggagt gggtactgtg cccagtgggg atgtgagact
      421 actggggatg cgtattggaa gccatcctca tcttgggacc tgataactct gaaacgagac
      481 ggtcggcctc cttacacctt atgtaaacgg gacgcgaaat gcaatcccct cgtcctccac
      541 ttcaccgact caggtagaag agcgacctgg gacgggccca aatcttgggg cctgcgctta
      601 tacgtcacag ggaccgatcc ggtgggtctg ttctctctaa atagacaagt ctctcccctg
      661 gccactcgac ccattggacc caacccagtt ctaccagatc agaagcctcc ctcgctcccg
      721 gcacaagccc aacccccgtc attgcctaag gtcacccagg cccctggtag tactcccaca
      781 agccccttct ccacaacggg gggctccacc attttgatct ccccatcgcc aggcaccggg
      841 gatcgattat tcaatttggt ggctggtgca tatctggctc tcaactattc agaccctttt
      901 aggactcagg agtgctggtt gtgtctcgtt tccggtccgc cctattatga aggggtagca
      961 gtcattggaa attacaccaa cctgactgct gccccagaca gttgtgccaa tacccccagc
     1021 cacagactaa ctctgcccga ggtctcggga cgagggctct gcttggggaa tgtacccccc
     1081 acacaccaga ccctctgcaa caccactcag aagattccca tcgggaacta cttcctggca
     1141 gccccaaaag gcacatactg ggcctgcaat accggactaa caccctgtat ctcagccaca
     1201 gtcctcaacc aatcctctga ctattgtgta ttagtagaaa tttggcccaa agtcacctac
     1261 catgaatccg agtatatata ctcgtttttt gagaaacaga ctcgttttcg acgagagcct
     1321 gccaccctga ctttagcttt actcctagga ggaatcacct tggggggagt ggccgcgggt
     1381 atagggaccg ggaccactgc actcattgaa actggccatt tccgtcagtt acaagcagcc
     1441 atgaatgcag atcttaaagc tatagaagag tctgtgagtg cattagaaaa gtccttaaca
     1501 tcgttgtctg aagtggtcct ccaaaataga cgagggctag atatgttgtt cctccgcgag
     1561 ggtggattat gtgctgctct aaaagaagag tgctgtttct atgcagacca tactggaata
     1621 gtaagagata atatggctaa gcttcgagaa cgcctggccc aaagacaaaa actgtttgat
     1681 tcccaacagg gatggttcga ggggtggttt aaccgatccc cttggtttgc taccctcctg
     1741 tctaccctga tgggacccct acttattctt ctcctaattc ttctttttgg accctgcatc
     1801 cttaataggc tggtacagtt catgagggat agactttcag tcattcagat cctcgtactg
     1861 acgcagcagt accataggct gagacaacaa gagacagaaa tttcttgacc aagttgagtg
     1921 aaagatttca ctcaaagtta gcaaaaaatg ggggaatgaa agaccccagc ttagcagcag
     1981 taatgccatt ttgcaaggct gtacttaaga
//
