LOCUS       XM_039097291            3825 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protocadherin alpha-2-like
            (LOC120098167), mRNA.
ACCESSION   XM_039097291
VERSION     XM_039097291.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3584              JACYVU010000299.1  18031282-18034865
            3585-3703           JACYVU010000299.1  18034867-18034985
            3704-3762           JACYVU010000299.1  18257878-18257936
            3763-3825           JACYVU010000299.1  18260834-18260896
FEATURES             Location/Qualifiers
     source          1..3825
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3825
                     /gene="LOC120098167"
                     /note="protocadherin alpha-2-like; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 15 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 33 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:120098167"
                     /db_xref="RGD:41362300"
     CDS             1317..3683
                     /gene="LOC120098167"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: protocadherin alpha-2-like"
                     /protein_id="XP_038953219.1"
                     /db_xref="GeneID:120098167"
                     /db_xref="RGD:41362300"
                     /translation="MPSLRGGPEVRQCLLLLLPFLAAWEAGSGQLHYSVTEEAKHGTF
                     VGRIAQDLGLELAELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGQSAEC
                     SIHLEVIVDRPLQVFHVEVEVRDINDNPPLFPMTEKIIQFFESRVLHSRFPLEGASDA
                     DIGANALLSYKLSPSEFFFLDVQTSDELSQSLFLVLGKSLDREENAEVKLLLVATDGG
                     KPELTGTVQILIKVLDVNDNEPTFPQSVYKVPLLENTANGTLVIKLNASDADEGANSE
                     IVYSLSSDVSSTTRTKFQIDANSGEIRTTGELDYEEKTSYEIQIIASDKGTPSMSGHC
                     KISVKLMDINDNTPEVSITSLSLPVQENAPLGAVIALISVSDRDSGINGQVTCSLSPH
                     LPFKLVSTFKNYYSLVLDSALDRETTAEYKVMVTARDGGSPSLQATATISVEVADVND
                     NAPLFAQPEYTVFVKENNPPGAHIFTVSAVDADAQENALVFYSLVERRMGERLLSSYV
                     SVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDENDNAPMLL
                     PHGAVGVGGSVSELVPRSVGSGHVVTKVHAVDADSGYNAWLSYELQPTVGTRIPFRVG
                     LYTGEISTTRALDEVDALRHRLLVLVKDHGEPALTATATVLLSLVENGQAPKTSSRAL
                     VDAAGQETSLVTVNVYLIIAICAVSSLLVLTLLLYTALRCSAMPTNGACAPGKPMLVC
                     SSAVGSWSYSQQRRQRCALERAYLRLISWPSVPVYPKVQNRQKRDNHP"
ORIGIN      
        1 ttctctgttt taccattgct tgtcctagaa tttgctttgt agaccagact gggctcaaaa
       61 tcagagatcc tgcctctgcc tcccaagtac tgggattaaa ggcgtgcatc accataccca
      121 actcagagaa aagttattaa gatctagctc caggacaatc tatctgtatt gctgctttta
      181 ctgacagtgt aaactttgca gttcattttg ttttcctcta agaaagctaa aaacaacatt
      241 ttaaacttaa acagagtaac aagtgtgcaa cttgagaaga acttcgctaa ctgacattcc
      301 tccattcatt tcaaataatc ccacaccatc tttacttgag tttcatattt ttacacatga
      361 aggaagttga ctaaaaatta ataaagatac tctcaagtaa ctaagaccaa aaagatcagt
      421 ttgttctttt tgcatgaaaa ttcaaatata acagataaga gaatgatcct aaagtaaaaa
      481 tatatttttt atataagaaa ctaatgtaac cagcaattta aacctcgaaa ttataaataa
      541 caaaagtgta tttaaacaca ttttcaatga acaaaaatag ccattgattc tcttgtactt
      601 gatttgaaga agcaataaaa aatgtaatat tacaaaaaat gaaaccagtc tatccaaaag
      661 atacttgcac atgtgtgttg gtaagatcac tatttacaag aagcaaacag acgttcatgg
      721 atggttgaat ggacactcaa aaatgctgtg aatacacaac ggaatcattc agcattaaaa
      781 aggaaagaaa tcttgtaaca tgctacaaga cgggtgaaac ttcaggacat tgtggtaagc
      841 tgacagagcc agtctcaaaa aaaaaggaaa acagagcact caagccagaa caacaacctc
      901 agcaaatctt ttatggatta actcacactg tagtgaaact tacataagca cggagtagaa
      961 tagtggttac cgtgggcaag gccaggggag ctggagttaa ctaaatttgc aacaacgtga
     1021 atatacttag cactactgaa gtatacactg aattaacgca taaacttcac atcgacagtt
     1081 aaatacggta aactcatatt tacagttaat aaggtaaaat tcaaaccagc ttaaccacag
     1141 ggtgtcgctg tctaccagag agtgatttct ctcttggaaa gaaaacaccc tgagctcttt
     1201 gttactccag ataaaacgac aggagaagca ggaggatttg agtaggtgtt agacctttta
     1261 ttttatttaa aaaaaatgat cgtttaattt gaccaactca cggaggacta gaagtgatgc
     1321 cttctttgag agggggtcca gaggtcaggc agtgtctgct gctcttgctt cctttcctcg
     1381 cagcctggga ggcagggagc ggccagcttc attactccgt tacagaagag gccaaacacg
     1441 gtaccttcgt gggccgcatc gcgcaggacc tggggctgga gctggcggag ctggtgcccc
     1501 gcctgttcag ggtggcgtcc aaggaccgcg gagaccttct ggaggtaaat ctgcagaatg
     1561 gcattttgtt tgtgaattct cggatcgacc gggaggagct gtgcgggcag agcgcggagt
     1621 gcagcatcca cctggaggtg atcgtggaca ggccgctgca ggttttccac gtggaggtgg
     1681 aggtgaggga cattaacgac aacccgcctc tatttccaat gacagaaaaa attatccagt
     1741 ttttcgaatc tagggtgctt cactcgcggt ttcctttaga gggagcatct gatgcagata
     1801 taggagcaaa tgctcttctg tcctacaagc tcagccccag cgagtttttc tttctagatg
     1861 tacaaacgag tgatgaacta agccaatctc tgtttcttgt gctggggaaa tctctggata
     1921 gagaggagaa tgcggaggtg aaattgttac tggtagctac cgacggaggc aagcctgaac
     1981 tcacgggcac tgttcaaata ctcattaagg tgttagatgt gaatgacaac gaacctactt
     2041 tcccccagtc agtttacaaa gtgccgctgt tagagaacac tgcaaacgga accctggtga
     2101 ttaaattaaa cgcttctgat gcagatgaag gagcgaacag tgagattgtg tattcactca
     2161 gtagtgatgt gtcttctacc acacggacaa agtttcaaat agacgcaaac tcaggagaaa
     2221 tcagaactac gggagaatta gattatgaag aaaagacatc gtatgaaatc cagatcattg
     2281 catctgacaa aggaaccccg tcaatgtcag ggcattgtaa aatttcagta aaacttatgg
     2341 atatcaatga caacacgccg gaagtttcaa taacgtctct ttcactacct gtccaagaga
     2401 atgctccact gggtgctgtc atcgccctca tctcagtctc agatcgtgac tcaggaatca
     2461 atgggcaggt gacctgctcc ctaagtcctc acctcccctt caagctggtg tccactttca
     2521 agaactacta ttcgctcgtg ctggacagcg ctttggaccg ggaaaccaca gctgagtata
     2581 aggtaatggt gacagcccgg gacgggggct caccttcgct gcaggccaca gctaccattt
     2641 ctgtggaggt ggctgacgtg aacgataatg cgcctctgtt cgcgcagcct gaatacacgg
     2701 tgttcgtgaa ggagaacaat ccacccggcg cacacatctt tacagtgtcg gcggtggatg
     2761 cagatgcaca ggagaacgcg ttggtgtttt actcgttggt ggagcggagg atgggtgaac
     2821 gcttgctgtc gagctatgtg tctgtgcacg cggagagcgg caaggtgttc gcgctgcagc
     2881 ctctggacca tgaggagctg gagctgctgc agttccaggt gagcgcgcgg gatgctggtg
     2941 tgcctgccct gggcagcaat gtgactctgc aggtgtttgt gctggatgag aacgacaatg
     3001 cacccatgct gctgcctcac ggagctgtgg gagttggcgg ctcagttagt gagcttgtgc
     3061 ctaggtcagt aggttcaggt catgtggtca ccaaggtgca tgcagtggat gcagactctg
     3121 gttacaatgc gtggctgtca tatgaactgc aacccacagt tggcacacgt atcccgttcc
     3181 gcgtgggtct gtatacgggt gaaatcagca ccacgcgcgc cttagatgaa gtggatgcgc
     3241 tgcgccatcg cctactagtg ttggtgaagg accatggtga gcctgcgcta actgccacag
     3301 ccacagtgtt actttctcta gttgagaatg ggcaagctcc aaaaacttca tcaagagcgt
     3361 tggtagatgc cgctggccaa gagacatctc tggtgactgt taatgtgtat ctgatcatcg
     3421 ccatctgcgc agtgtccagc ctgttagtgc tcaccctgtt gctgtacacc gcgctgcgct
     3481 gctcggcgat gcccaccaat ggagcctgtg ctccagggaa gcccatgctg gtgtgctcca
     3541 gcgcggtggg aagctggtcg tactcgcagc agaggcgaca gaggtgtgct ctggagaggg
     3601 cctacctaag actgatctca tggccttcag tcccagtcta tcccaaggtc cagaatcggc
     3661 agaagagaga caaccaccct tagaggccga acacttagga aagccccgac agcccaaccc
     3721 tgactggcgc tactctgcct cgctaagagc cggcatgcac agctctgtgc acctggagga
     3781 ggctggcatt ctacgggctg gtccaggagg gcctgatcaa cagtg
//
