LOCUS       XM_039097290            6081 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protocadherin alpha-8-like
            (LOC120098166), mRNA.
ACCESSION   XM_039097290
VERSION     XM_039097290.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-5836              JACYVU010000299.1  18068234-18074069
            5837-5958           JACYVU010000299.1  18074071-18074192
            5959-6017           JACYVU010000299.1  18257878-18257936
            6018-6081           JACYVU010000299.1  18260834-18260897
FEATURES             Location/Qualifiers
     source          1..6081
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6081
                     /gene="LOC120098166"
                     /note="protocadherin alpha-8-like; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 1 EST, 15 Proteins, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     26 samples with support for all annotated introns"
                     /db_xref="GeneID:120098166"
                     /db_xref="RGD:41284742"
     CDS             3569..5938
                     /gene="LOC120098166"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: protocadherin alpha-8-like"
                     /protein_id="XP_038953218.1"
                     /db_xref="GeneID:120098166"
                     /db_xref="RGD:41284742"
                     /translation="MVFARRGGPDSRRLLLLLLLFSIWEAGSGQLHYSIPEEAKHGTF
                     VGRIAQDLGLELAELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAEC
                     SVHLEVIVDRPLQVFHVEVEVRDINDNPPVFPVKEQKLHISESRMLDSRFLLEGAFDA
                     DIGANSAVTYRLDSNDYFTLIVSSKNEESKQVELALRKLLDREDAPEHKLLLTATDGG
                     KPELTGSVQLLVTVLDVNDNAPTFQHPEYEVRILENSDNGTTVIRLNASDRDEGTNSA
                     ISYSFNRLVSPRILDQFSIDADTGEIVIQGNLDFEQVDVYKIRVDATDKGHPPMAGHC
                     TVLVRVLDENDNVPQITLTSLSLPVREDAALGTVIALISVSDLDSGANGRVTCSLTPH
                     VPFKLVSTFKNYYSLVLDSALDRETTADYQVVVTARDGGSPSLCTTASVSVEVADVND
                     NAPAFAQPEYTVFVKENNPPGARIFTVSAMDEDAQENALVSYSLVERRVGERLLSSYV
                     SVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDENDNAPSIL
                     LAGTEGLGSVATDLIQRSVSVGQVVAKVRAVDSDSGYNAWLSYELQPSVGPRSPFRVG
                     LYTGEISTTRALDESDAPRQRLLVLVKDHGEPTLTSTATILVSLVESSQAPKASSQAS
                     SRASVPEASLVDINVYLIIAICAVSSLLVLTLLLYTALRCSTTPTDGVCAPGKPMLVC
                     SSEVGSWSYSQQRRQRCAPERAHLRPTSWLLVPVFHRVQYQRSLGKGKI"
ORIGIN      
        1 cttaaatatt tttctctcca ggagtggaaa aaatagttta gctgtattta tttcatgatg
       61 taatctatta attgcaacac cagggaggct gaggaataag ggaatttaat ttttagctta
      121 gtctgactta cacaggggtt aaggccagtt tgggtttctc tttcataaac ttggtaattt
      181 atgttggtct ggactattga taaaacttgc taatatgatt aatgtcttta cattctttac
      241 gtaggagatt tctaaagtta agtgtatcca caaccggtac attattcaat gtccagacct
      301 cataaaaaag aattcccaca gcatgctagg caagcactcc caatgagaac ttataaatcc
      361 tacagtaaac taatttaaat atatatgctg acctattact actttgtgtc ttgcatattc
      421 taccacaaca taggtttcaa cattataggt gtaatatttt tactctacaa gttgaattat
      481 ctctgtttct tattgcaaga atttatattt tccaatcata tttgtgtagc actttctttt
      541 ttaaacctta cttgtaggat tgtacttgcc atgtttgtgg taattaatat tacttaaaaa
      601 tatagttcca tcgggactac tcacattcaa aatacagaag aattaactct agtgtacagc
      661 gaaagttatt cccagttctt acagtgaagc atttacttct ttgaattctg ggaggttttg
      721 gcttctgttt tgtattctaa aactacaaat atatatgcga catgcctttc tgtttaggaa
      781 aatagtgccc cttcaaacct tctcttctgc attgttgcac ttcttctctt gcaaggcagg
      841 catcatcttt tgttcattca tcatgtcaag tatctgcatc ttacttcatt actcagatta
      901 agatcaggac ttatcagcta agttgttcat cgtgcacatc cgtggtgcac aaaggcaggt
      961 cagaaaactt gtgctgtttt taaaatttca agtatttgtt tagttacctc tgactatcca
     1021 ccttcaaagc tggctcaatt ctaatatatg ccatgagatt attttggaat attttgctct
     1081 tgtttttaga gtaagtaaag taaatgtgct caactcctgg gcagctctca ggagacttaa
     1141 ccttagagca ctaccacagg cacaccaaat tctgcttcta tttaaagaat agtccatttg
     1201 gagaatattt atgattattg tagagtttta gtgacagtaa tcataatggt tgtattgatt
     1261 ttcaaagttt tgtttcatcc tacatggata taccaattta aagccttcct agcaaattaa
     1321 ctaataaaaa ttaagattaa ttcatttttg gacactacag aagttgacag gagaaccccc
     1381 ttaccatggc atctgtattc atgagctatc attatttttt ttattaggaa atcagtttga
     1441 gagatacaaa ctcaggtttt tctttgctgg ctatgggata tatttcttgt ttgtaaaatt
     1501 cacagagatt ctgtagttcc attttaacaa tgtctttaat gttatttata gagatagtct
     1561 tttgttaact aaaatgagaa taaagttaat agtttcatag aaaactccat catttccctt
     1621 ttctcttttt cttgtctgtg cattttcagt aactcggcat ctgtagctaa tgatatattc
     1681 ttattccaag cactaagaag caattaaaat aatacataat tatatctatc atatccccaa
     1741 acatccagat ttttaagaac ttaagtaaaa agccataggt tatgctttac ttaattttag
     1801 aaattcaaac tattcagtta gaactacatt tatgtaaaca ttataaccac tagaagcttc
     1861 cagtgtgatg taacttttgt aggtactcta cagaatacaa ggataggaat ctagagaaaa
     1921 acaacaggtg tcattgaaat aatctgcaat ttagtgataa ggccactaga ggaattccaa
     1981 ttaatataca cctaattgaa agcagttatt aaaaaaacaa cgaatttttg gagaattaac
     2041 ttatgaggtt aactttgaga gtaccattgt catggataaa aatgaagtaa aagagaactt
     2101 taacagaagc gttttaggat gagatggggt gtttctgtaa aacataattc acagtgaaaa
     2161 gacgtcagag gcaacatgaa gatggcctga tgtgagactg aggactcata cttgtcaaat
     2221 agaaatcaaa tgtgctagag gcctcagcac actccactag aagttatagt cataagcaca
     2281 acaatcatgg tatataaaat gggaagggac taggaaaact ttaaatattg tatgcaagag
     2341 agaaccagtt ataaaattaa gtttgggact atgcctaagt aaatttggag aatggccaaa
     2401 atatagaaat catgatgttc aaatatttag atttggtggt aagtattgat atttattttg
     2461 gacttttgag acagggtttc tcctaacact cctgggattc attatacaga gcaggttggc
     2521 cttgaattca caatcatcct cctgcctctg cctccctggt gctagaaagg aaggcatgca
     2581 ccaccacctc cacctttgta attataggtt taaacattct tcaaaacttg tctaaagaca
     2641 ttgacacaca gagaagactc ttattaaaga aagagcaaaa agtatgaaga agataaagtc
     2701 ataattttgg agttatgctc atattttgga gcagaagaaa gatccaaatc cagccaagac
     2761 cagaagttga aatattattt ggatttacaa tggctgagaa atctataaag gaaaatgttg
     2821 tgagaggctc atttgataca ttacacatat attgattgtt ggaaaaatat gggttttcat
     2881 tttccaagaa tttgtaagta aaacagttta aaatgttttt atgttcactg ggaacatcaa
     2941 gaggatgttt tcaaatgtaa taaggattca caagaacaca tataaactta agaaaaatta
     3001 gaattatatg ttcatataga ataatatatt tcaatgaccg ctgccaatga acaaattact
     3061 tccacagaca agtgtggagg gaagtttata cttgtgatat gcatgtaatt tccaggtcat
     3121 aacacatatt acagagaatt attagcatac tattgataga ccagtattta aaatattgga
     3181 aagagacatt ttcactaatg aaaagatctc tcactgaaac ggaatctctg taaaggagag
     3241 agaagacaaa catgcatgca cctgcaacag taagaatcta ctattaaaga attaaaaaat
     3301 gaaaagaaaa tattcatatt atgaaagaac ccaattattg cccaggttgt taaatctttg
     3361 gactcattac ctattggagc cacatgatgt cgctgtctat caaggtctgc ctcactcaga
     3421 tcccaagact ctctcacagc cgtatgtttc ttaaaatccg ctgaacaatg gcagttgccg
     3481 ctcaactgga ttaaaggatt cgagatgccc aacagttgat ctttatatca agaccagatt
     3541 tctcaaagga acaaaaggag tccttgacat ggtgtttgct cggcgaggag gtccggattc
     3601 ccggcgtctg ctgcttttgc ttctgctgtt ctcaatctgg gaagctggga gcggccagct
     3661 ccactactcc atccctgagg aggccaaaca cggcaccttc gtgggccgca ttgcacagga
     3721 cctgggactg gagctggcgg agctggtgcc ccgtctattc agggtggcgt ccaaggaccg
     3781 cggagacctt ctggaggtaa atctgcagaa tggcattttg tttgtgaatt ctcggatcga
     3841 ccgggaggag ctgtgcggga ggagcgcgga gtgtagcgtc cacctggagg tgatcgtgga
     3901 caggccgctg caggttttcc acgtggaggt ggaggtgagg gacattaacg acaacccgcc
     3961 ggtattcccc gtgaaagaac aaaaactgca tatttcagaa tccagaatgc tagactctag
     4021 gtttctgcta gagggcgcat tcgatgcaga cattggagcc aattcagctg taacttatag
     4081 gcttgactct aatgattact tcacactaat tgtgagttca aagaacgaag aaagtaaaca
     4141 ggttgagcta gctttaagaa agttgttgga cagagaggat gctcctgagc ataagctact
     4201 gctgacagcc acggatggag gcaagcctga gctcacaggc tcggttcagc tgctggtcac
     4261 tgtgctggat gtgaatgaca acgcccctac tttccaacac cctgagtatg aagtgagaat
     4321 cttggaaaac tcagacaacg gaacgacagt tattagactg aatgcttctg acagggatga
     4381 agggacgaat tcagcaattt cttactcttt taataggctg gtgtcgccca ggattcttga
     4441 ccagtttagc atagatgcag acacaggaga aatcgtaatt caagggaatt tggactttga
     4501 gcaagtagat gtctacaaaa tccgcgttga cgcgacggac aaaggacacc ctccgatggc
     4561 aggccattgc actgttttag tgagggtatt ggatgaaaac gacaatgtgc ctcagatcac
     4621 cttgacttcc ttatccctgc ctgttcgaga ggacgctgca ctgggtactg tcattgctct
     4681 aattagcgtt tctgatctgg actctggagc caatgggcgg gtgacctgct ccttgactcc
     4741 gcacgtcccc ttcaagctgg tgtccacctt caagaattac tattcgcttg tgctggacag
     4801 cgccctggac cgagagacca cagctgacta tcaggtggtg gtgacagcgc gggacggggg
     4861 ttccccttct ctgtgtacca cggccagcgt gtctgtggag gtggctgacg tgaacgacaa
     4921 tgctcctgcg ttcgcgcagc ccgaatacac ggtgtttgtg aaagagaaca acccgcctgg
     4981 agcgcgtatc ttcacggtgt cggcaatgga tgaggatgca caagagaatg cgctggtgtc
     5041 ttactctcta gtggagcgta gggtggggga gcgcttgctg tcgagctatg tgtctgtgca
     5101 cgcggagagc ggcaaggtgt tcgcactgca gcctctggac catgaggagc tggagctgct
     5161 gcagttccag gtgagcgcgc gggatgctgg tgtgcctgcc ctgggcagca atgtgactct
     5221 gcaggtgttt gtgctggatg agaacgacaa tgctccatcc attcttttgg ctggtactga
     5281 aggcttgggt agtgtggcaa ctgatctgat acagaggtct gtgagcgtgg gtcaggtggt
     5341 cgcaaaagtg cgggcggtgg actcagattc tggctacaac gcatggttgt cgtatgaact
     5401 gcaaccctca gtgggccctc gtagcccgtt tcgtgttggg ctgtacacgg gtgagatcag
     5461 tacaacacgt gctcttgatg agtctgacgc acctaggcag cgtctgttgg tattggtgaa
     5521 agaccatggt gagccaactc tgacttccac agctaccatc cttgtgtccc tggttgagag
     5581 tagccaggca ccaaaagcct cttctcaggc ttctagtcgt gcttcagtcc cagaggcctc
     5641 gctggtggat atcaacgtgt atctgatcat tgccatctgc gcagtgtcca gcctgttggt
     5701 gctcacgctg ctgctgtata cagcgttgcg ctgctcgacg acgcccaccg atggagtctg
     5761 tgctcctggg aagcccatgc tggtgtgctc tagtgaggtg ggaagctggt cctactcaca
     5821 gcagaggcgg caaaggtgtg ctccggagag ggcccaccta agaccgacct catggctttt
     5881 agtcccagtc ttccaccgcg tccagtatca gaggtcattg gggaagggca agatttaaat
     5941 gaccatcatg gctttcaacc ccgacagccc aaccctgact ggcgctactc tgcctcgcta
     6001 agagccggca tgcacagctc tgtgcacctg gaggaggctg gcattctacg ggctggtcca
     6061 ggagggcctg atcaacagtg g
//
