LOCUS       XM_039095317            1140 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus igE-binding protein-like
            (LOC120097694), mRNA.
ACCESSION   XM_039095317
VERSION     XM_039095317.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 5% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-49                JACYVU010000009.1  6882943-6882991     c
            50-996              JACYVU010000009.1  6868567-6869513     c
            997-1140            JACYVU010000009.1  6868422-6868565     c
FEATURES             Location/Qualifiers
     source          1..1140
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1140
                     /gene="LOC120097694"
                     /note="igE-binding protein-like; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: deleted 1
                     base in 1 codon; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein, and 73%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:120097694"
                     /db_xref="RGD:41343609"
     CDS             1..1140
                     /gene="LOC120097694"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: igE-binding protein-like"
                     /protein_id="XP_038951245.1"
                     /db_xref="GeneID:120097694"
                     /db_xref="RGD:41343609"
                     /translation="MGCTAEESENESWLVLVPDRVRRKLQLTFPVFETQEGERVHAPV
                     EYNQIKELAESFRKYGVTANFTLTILERLALNYLTPADWQMIAKATLVNMGQYMEWKA
                     LWYEAAQTQARANATALMPEQREWTFELLTGQGRFAADQANYHWGAYIQVSSSAIKAW
                     KALTRKGGADNQLTRIIQGPQEPFSDFVARMTETARRIFGDAEQAAPLIEQLVYEQAT
                     QECRAAIAPRKNKGLQDWLRVCRELTKPLTNAGLVAAILQSRQRPLKGTDTRSCFRCG
                     KMGHLKRDCRITKGDRRPATICARCGKGYHRPDQCRSVRDIKGKLLPPLEAQPNEMQK
                     NGSLGPRSQGPQRYGNRFQKAMTLTEETPQEVTQNWTCVPPPTSF"
ORIGIN      
        1 atgggctgca cggcagaaga gtcggaaaac gaaagttggc ttgtgttagt ccccgatagg
       61 gtgagaagga agctgcagtt gacgttcccg gtctttgaaa cgcaggaggg tgagcgggtt
      121 catgccccag tcgaatataa ccaaataaaa gagctggcgg agtctttcag aaagtacgga
      181 gttacagcca atttcaccct aaccattctt gaaaggctgg ccctaaatta tttgacaccc
      241 gccgattggc agatgattgc aaaagcgacc cttgtgaaca tgggccaata tatggaatgg
      301 aaagcgcttt ggtatgaggc ggctcaaaca caggccagag ctaatgccac ggcgttaatg
      361 cctgagcagc gagaatggac gtttgaactc ttgacaggac agggtcgctt cgcagcggac
      421 caagctaatt accattgggg tgcttatatt caagtctcca gctcggccat taaggcctgg
      481 aaggcactca ctaggaaagg cggggccgat aatcaactta ctcgtatcat ccaaggacct
      541 caggaaccgt tctcagactt cgtagccaga atgacagaaa ctgctagacg aatatttggt
      601 gatgcggagc aagcagcacc gctcatagaa cagctcgttt acgagcaagc cacccaggaa
      661 tgccgggcgg ctatagcacc cagaaaaaac aaaggattac aggactggct cagagtctgc
      721 agagaactta ctaagcctct tactaacgca ggcttggtgg ccgccattct ccagtcccgg
      781 caacgccccc ttaaagggac agatacaaga tcatgttttc gatgtggaaa aatgggccat
      841 ttaaaaagag actgtaggat aaccaaggga gacaggaggc ctgcaactat ctgtgcccga
      901 tgtggcaagg gctaccatag gcctgaccag tgccgctcag ttagggatat taagggaaaa
      961 ttactccctc ccttggaagc tcagcctaat gagatgcaaa aaaacggatc gttaggcccc
     1021 cggtcccagg gccctcaaag atatgggaac cgctttcaga aagccatgac cctgacagag
     1081 gagactcccc aagaggtgac acaaaattgg acctgtgtgc cgcctccgac ttctttctaa
//
