LOCUS       XM_039095255            6260 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus probable ATP-dependent RNA helicase
            DDX60 (LOC120097562), mRNA.
ACCESSION   XM_039095255
VERSION     XM_039095255.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-408               JACYVU010000279.1  7854523-7854930     c
            409-516             JACYVU010000279.1  7837106-7837213     c
            517-583             JACYVU010000279.1  7836867-7836933     c
            584-773             JACYVU010000279.1  7836435-7836624     c
            774-1115            JACYVU010000279.1  7834611-7834952     c
            1116-1232           JACYVU010000279.1  7831417-7831533     c
            1233-1394           JACYVU010000279.1  7828889-7829050     c
            1395-1553           JACYVU010000279.1  7827268-7827426     c
            1554-1695           JACYVU010000279.1  7820689-7820830     c
            1696-1851           JACYVU010000279.1  7819047-7819202     c
            1852-1957           JACYVU010000279.1  7817084-7817189     c
            1958-2073           JACYVU010000279.1  7816559-7816674     c
            2074-2231           JACYVU010000279.1  7811310-7811467     c
            2232-2484           JACYVU010000279.1  7807516-7807768     c
            2485-2651           JACYVU010000279.1  7804369-7804535     c
            2652-2807           JACYVU010000279.1  7802570-7802725     c
            2808-2957           JACYVU010000279.1  7800742-7800891     c
            2958-3077           JACYVU010000279.1  7796844-7796963     c
            3078-3173           JACYVU010000279.1  7795495-7795590     c
            3174-3289           JACYVU010000279.1  7794574-7794689     c
            3290-3432           JACYVU010000279.1  7793219-7793361     c
            3433-3542           JACYVU010000279.1  7792990-7793099     c
            3543-3647           JACYVU010000279.1  7789696-7789800     c
            3648-3776           JACYVU010000279.1  7788984-7789112     c
            3777-3901           JACYVU010000279.1  7787167-7787291     c
            3902-4057           JACYVU010000279.1  7778364-7778519     c
            4058-4205           JACYVU010000279.1  7772716-7772863     c
            4206-4238           JACYVU010000279.1  7770867-7770899     c
            4239-4239           "N"                1-1
            4240-4358           JACYVU010000279.1  7770748-7770866     c
            4359-4463           JACYVU010000279.1  7769014-7769118     c
            4464-4664           JACYVU010000279.1  7767228-7767428     c
            4665-4769           JACYVU010000279.1  7762022-7762126     c
            4770-4911           JACYVU010000279.1  7761431-7761572     c
            4912-5033           JACYVU010000279.1  7756446-7756567     c
            5034-5181           JACYVU010000279.1  7754857-7755004     c
            5182-5324           JACYVU010000279.1  7753191-7753333     c
            5325-5476           JACYVU010000279.1  7750521-7750672     c
            5477-5539           JACYVU010000279.1  7748907-7748969     c
            5540-6260           JACYVU010000279.1  7745308-7746028     c
FEATURES             Location/Qualifiers
     source          1..6260
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6260
                     /gene="LOC120097562"
                     /note="probable ATP-dependent RNA helicase DDX60; The
                     sequence of the model RefSeq transcript was modified
                     relative to its source genomic sequence to represent the
                     inferred CDS: inserted 1 base in 1 codon; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 4 Proteins, and 98% coverage of the annotated
                     genomic feature by RNAseq alignments, including 10 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:120097562"
                     /db_xref="RGD:41078313"
     CDS             513..5639
                     /gene="LOC120097562"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: probable ATP-dependent RNA
                     helicase DDX60"
                     /protein_id="XP_038951183.1"
                     /db_xref="GeneID:120097562"
                     /db_xref="RGD:41078313"
                     /translation="MEKRCTMFLERMSQLILENITRADYSSLFNDFVESEFFLIDGDS
                     LLLTCVCEMSLEPGQSLHFFYLVERYLLDVTSKGGQFAIVFFKDAEYAYFSVPELLTL
                     RTSLILHLQKNTTIEVWTMFSNCLSEEWSICLNQSCPYFLIVADEGLDHLQTHLLNFV
                     VIQAWAAKVNVVLFSGQTSDILRLYAYFMQSSYTNQMFFKKNEETIMNVYKALIEQLE
                     KYRDRALTPLFGDLKFNDMEKEVSEIVSLLKQLWPEGSDIRRVFCVTSCSLFLEMYHS
                     YLENREKRASTETSEVTQKPDNCLTLKDVEDFCKLHCLSVAFQLHLPLSQRARSRFIT
                     SNWIQDLQTVLKMKEWCEYFTLNNVDIFEFWSLDLLHVSDLSDEPLLKNIAFYYEYEN
                     KGGLDLKVGDVIMKEYIHLWDTVSKLVKKFDVGKPTPLRTTKVHFIEKTLSPIKESSQ
                     ETMPNLGFIPISCNLVDEFTRDILKDLPFLKSDDPIVTSLVKHKEFDELVHWHSHRPL
                     SDDYDRTKATFDDKKDPYYLSRLQKYHRFQRLYGSSLESVTSKMITTEGPKPKKDCIK
                     SKRTKAHKTKAEIIVRENKKRLIAEEEQKEGQKWSALSFSIEEEMRRNLNSGIKKLEE
                     FLKSCKSSSVKTQAERVGLQACLKAWKEHCRAEGKTTKDFNIAVNMMKRIHSLLEKQS
                     EFLQEADQKLIARCLTYLGFYELADSLCPTQDTADDVKMTKKKYSVGIGPARFQLQYM
                     GHYLIREERKDPDPRVQDFIPDTWQRELLDVVDNYESAVIVAPTSSGKTYASYYCMEK
                     VLKESNEGVVVYVAPTKALVNQVAATVQNRYTKNMPGGEALCGVFTRDYRHEALNSQV
                     LITVPACFEILLLAPHRQNWVKRIRYVIFDEVHCLGGEIGAEIWEHLLVMIRCPFLAL
                     SATISNPQHLTEWLQSVKRYWKQVDSTMEQGSVSQRNAATRGSYHKDRVQARQSYKVR
                     LVLYGERYNDLEKYLCSVRQGDVCFDHFHPCAALTTDHIEKYGFPSDLALSPRESIQL
                     YDTMCQVWKSWPQAQNLCPENFTQFKNKIVIKKLDARKYEESLKEEFTNWVKNGNEKE
                     AQLVLKKLSPDYHDYSGQMLDFFPCLVEKLRKMEKLPALFFLFSLDTVEECAENVCEF
                     LEEKQEEKRPPKADKEAYIMANKLRKVKKSLEKQKIDEKGQKSSRRLDQSIMYEAEHN
                     YLLKSLEKNLEIPKDCTYADQKAIDEETLQIVFGRVKCXKKGDKLKKLARRGIGYHHR
                     SMTAKEKQLVEILFRKGFIRVVTATGTLALGINMPCKSVVFAQNSVYLDALNYRQMSG
                     RAGRRGQDLLGDVYFFDIPLPKIGKLIKSKVPELRGQFPLSITLILRLMLLATKADDL
                     EDGKAKALSVLKHSLLSFKQPRATDMLKLYFLYSLQFLVKEGHIDQEGNPTGFAGLVT
                     HLNYHEPSNLVFVSFLVKGLFHKLCQPTSKDSKCFSEDVMEKLVLVLANLFGRIYIPA
                     KFYEVNTKFYQSKVFLDDLPQDFSDALLEYNMQVTRDFASFLLIVSRLADMKQEYQLP
                     LSKIEFAGKECEDSPLVSHLMSCKEGRMAVSPFVCLSGNFDVDLLSPGVPNHVTLHTI
                     CINHAQAPVLWPHRLDSQGRKMPLNAYALDFYKHGSLTGLVQDNRIHRGDAYNLLKDF
                     YLTIKSISVSLRELCENEEDNVVLAFEQLSKSFHEKFELV"
ORIGIN      
        1 gatgtctgac tcagtctctt gaggattctt tgtaaacggg gatctgggat agggatcaat
       61 aagtaggaac attgagaggt gtgcacagcc aataaaagtt gggcatccgc atgaatagtt
      121 tttctcctag gtgccgtatc gggtccctac tccagacttg ctgagctaga aagctgaatg
      181 tgaagatgaa ttatagttac ccttaaattt cagtggctaa gacagtatat actttactgt
      241 aggaaccgcc ccctcactcc agtctctgtg ctgtttcccc tagttatctc cctgtgcttc
      301 ctggtactcc ctatggacca ggctggcctt gaacttggag taaccctact gcctcagtct
      361 ccctgtttta atcacctaag atttaatgta ttcacatgta agaagcagat atgctgtttc
      421 attattaatg accattgaga ggaaacagag taaaggatat ttacattttt aattttcccc
      481 aggtcgggtt ggaagcacag atagcagcaa gaatggaaaa acgatgcaca atgtttttag
      541 aaagaatgtc gcaattaatc ttggaaaata taacaagagc tgactattcc agcttattca
      601 atgattttgt tgaatctgag ttctttctga ttgatggtga ctccttgctc ctcacatgtg
      661 tgtgtgagat gtcacttgag ccaggacaga gtctccattt cttctacctg gttgaacgct
      721 acctgctgga tgttacgagc aaaggagggc aatttgccat cgttttcttc aaggatgctg
      781 aatatgcata cttcagtgtc ccagaacttc ttacactgag aacttcttta attctgcatc
      841 ttcagaagaa taccaccatt gaagtttgga ctatgttttc taactgcttg tcagaagagt
      901 ggagtatttg cttgaatcag agctgcccat atttcttgat agtggctgac gaaggcctag
      961 accacctgca aacacatctt ttaaactttg tagtcattca ggcttgggca gcaaaggtca
     1021 atgttgtgct tttctcaggg caaacatctg acatccttcg tctttatgca tactttatgc
     1081 aaagctcgta cacaaaccag atgtttttta agaagaatga agaaacgatt atgaatgttt
     1141 acaaagccct gattgaacag ttggaaaaat acagagatag ggctttaaca cctctgttcg
     1201 gagatttaaa attcaatgat atggaaaaag aggtatctga aattgtatct ttgctgaagc
     1261 aactctggcc agaaggatct gacatccgac gtgtcttttg tgtcacctca tgttctctct
     1321 tcttggaaat gtaccacagc tacttagaaa acagagagaa gagagcatcc acagagacat
     1381 ccgaagtcac acagaaacca gataattgct taaccctgaa ggacgtggaa gacttttgta
     1441 agctacattg cctcagtgtg gcttttcagc tccatttacc tctctcccag agagctcgct
     1501 caagattcat cacttcgaat tggattcagg acctccagac tgtcttaaaa atgaaagagt
     1561 ggtgcgagta tttcacccta aataatgtgg atatatttga attttggagc cttgatttac
     1621 ttcacgtttc tgacttaagt gatgagcctt tgttgaagaa tattgctttt tactatgaat
     1681 atgaaaataa aggaggcctg gatttgaaag taggagatgt catcatgaaa gagtatatac
     1741 atctctggga cactgtgtca aagttagtca aaaagtttga tgtgggaaaa ccaactcctc
     1801 tgagaacaac aaaagttcat tttattgaaa agacactgtc gccaatcaaa gaaagttccc
     1861 aggagacgat gccaaattta ggtttcattc caatatcatg taatttagtt gatgagttta
     1921 ctagagacat tttgaaagac ttgcctttcc taaagagtga tgatcccatt gttacgtcac
     1981 tggttaagca taaggaattt gatgagcttg tgcactggca ttcccacaga cccctgagtg
     2041 atgattatga caggacaaag gccacttttg atgacaaaaa agacccctat tatctttcac
     2101 gtttgcagaa gtatcatcgt tttcaacgat tatatgggag ctcattagaa tcagtcactt
     2161 caaagatgat cacaactgaa ggtcctaagc caaagaagga ttgtattaag tctaagagaa
     2221 caaaggcaca taagaccaag gctgaaataa ttgtaagaga gaataaaaag agattaattg
     2281 ctgaggaaga acaaaaagaa gggcaaaaat ggagtgccct gtcattttct atcgaggagg
     2341 agatgagaag gaatttaaac tctggaataa agaagctgga agagttcttg aaatcatgta
     2401 aaagtagctc agtgaaaact caggctgaga gagttgggtt acaggcttgc ttgaaagcct
     2461 ggaaggaaca ttgccgagct gaaggtaaaa ccacaaaaga cttcaacata gctgtcaaca
     2521 tgatgaagag gatccactcc ttgttggaaa aacaatctga atttttgcaa gaagcagatc
     2581 aaaaactcat agccagatgt cttacgtatt tagggtttta tgagctagca gattctttat
     2641 gtccaaccca ggacacagca gatgacgtaa agatgacgaa aaagaaatac tcagttggga
     2701 ttgggccagc tcggttccaa ctacagtata tgggtcacta tctgatacga gaagaaagga
     2761 aagacccaga ccccagggtc caagacttta ttcctgacac gtggcagcga gagctcctgg
     2821 atgtggtgga taactatgag tctgcagtga ttgtcgcccc aacatcgtct ggcaaaactt
     2881 atgcttccta ctactgcatg gaaaaagtgc tgaaagagag taatgaaggc gtggttgtgt
     2941 atgttgcacc aacaaaggct cttgttaatc aagtggcagc aacagttcaa aatcgttaca
     3001 ccaaaaatat gccaggtggt gaagctctct gtggtgtttt tactagggac taccgtcatg
     3061 aagccctcaa ctctcaggtg cttattaccg tgcctgcctg ctttgaaatt ctgctactag
     3121 ctcctcatcg gcaaaactgg gtgaagagga tcagatacgt tatatttgat gaggtccatt
     3181 gtcttggtgg agaaattgga gcagaaatct gggagcatct ccttgtcatg atccgatgtc
     3241 cctttttggc cctttcagct accattagta accctcagca tctcaccgag tggctccagt
     3301 cagtaaagcg gtactggaaa caagtagaca gtaccatgga acaaggatct gtttcccaaa
     3361 gaaatgctgc cacccgtggc agctatcaca aagaccgagt gcaagccaga cagtcataca
     3421 aagttagact tgtgctctat ggagagagat ataatgatct agagaagtat ttgtgttcgg
     3481 tgagacaggg cgatgtttgc tttgatcatt ttcatccatg cgctgcacta accacagatc
     3541 acattgaaaa gtatggattt ccttctgatc ttgccttgtc accccgagaa agcattcagc
     3601 tatatgacac tatgtgccag gtctggaaga gttggcctca ggcccagaac ctatgtccag
     3661 agaacttcac tcaatttaag aataaaatag tcattaaaaa gctggatgct agaaaatatg
     3721 aagagagctt aaaggaagaa ttcacaaatt gggttaaaaa tgggaacgag aaggaggccc
     3781 aacttgtact gaaaaaactg agtcctgatt accatgacta ctcagggcag atgctggact
     3841 ttttcccatg tctcgttgag aagctaagga agatggagaa gttgcctgca ctattctttc
     3901 tatttagttt agataccgta gaagaatgcg ctgaaaatgt ttgtgaattc ctggaggaaa
     3961 aacaggagga gaaaagacct cccaaagctg ataaagaagc ttatatcatg gctaacaaac
     4021 ttcgaaaagt taaaaaatct ctggagaaac aaaaaataga tgaaaagggt cagaaatctt
     4081 ccagaagatt ggatcaaagc attatgtatg aagctgaaca caattacctc ctgaagagtc
     4141 tggagaagaa tctagagatt cccaaggact gcacgtatgc tgatcagaag gcaatagatg
     4201 aagagacatt gcagattgtg tttgggcggg tgaaatgtng gaaaaaaggt gacaagctga
     4261 agaagttggc aagaaggggc attggctatc atcacagatc catgactgcc aaagaaaaac
     4321 agttggtcga aattctcttt aggaaaggat tcatcagggt ggtgacagct actggaacac
     4381 tcgctttggg aatcaacatg ccctgtaaat ctgtggtttt tgctcaaaac tcggtctatt
     4441 tggatgcttt aaattataga cagatgtctg gtcgggccgg aagacgaggg caagacctgc
     4501 tgggtgacgt ctacttcttt gatattccac tgcccaaaat aggaaaactc ataaaatcca
     4561 aagttcctga gctgagggga cagtttcctc tcagtatcac actcatccta agactcatgc
     4621 tgctggctac caaggcagat gacctagagg atggcaaggc aaaggcactg tcagtgctga
     4681 aacactcgtt gttatccttc aaacaacccc gagccacaga catgttaaag ctttactttt
     4741 tatattcttt gcagttcctg gtgaaagagg gacatataga tcaagaaggt aatcctacag
     4801 ggtttgctgg ccttgtcaca catctaaatt accatgaacc ttctaatctt gtgttcgtca
     4861 gttttcttgt aaaaggcctt ttccataaac tttgtcagcc aacaagtaaa gattcaaaat
     4921 gcttttctga agatgtaatg gagaagctgg ttttagtatt agcaaatctt ttcggaagaa
     4981 tatatattcc agccaagttt tacgaggtta acaccaagtt ttatcaatca aaggtgttcc
     5041 ttgatgacct cccccaggac ttcagtgacg ccctgcttga gtacaacatg caagtgacaa
     5101 gggactttgc ttcctttctg ctcattgtgt cccgattggc agatatgaaa caggagtatc
     5161 aactcccctt gtcaaaaatc gagttcgcag gtaaagaatg tgaggattca ccacttgtgt
     5221 ctcacttgat gagctgcaag gagggaagga tggcggtttc gcccttcgtt tgtttgtctg
     5281 gaaactttga tgtggatttg cttagtccag gagttccaaa tcatgtcact ctacacacaa
     5341 tttgtatcaa tcatgcacaa gccccagtgc tatggccaca cagattggac agtcaaggaa
     5401 gaaaaatgcc acttaatgcc tatgcacttg atttctataa gcatggatcc cttactggat
     5461 tagtccagga caataggata catcgagggg atgcatataa tctgttgaaa gatttttacc
     5521 ttaccattaa atctatcagt gtctccttgc gtgaactgtg tgaaaatgaa gaagacaacg
     5581 ttgttttagc atttgaacaa ttgtctaagt cttttcatga gaagtttgaa ttagtgtgaa
     5641 aagaaaaact atgtaaacag cttaaactat cactacagaa gctttgtaaa ttacatattt
     5701 ttactcttat gtcttgatca agcaatcata catgatgaaa tggaatgaac aaacagttgc
     5761 catcaaactt cttatgtttg cctctaagca cccttggcca acatacttgg tgttttcctc
     5821 aaaacgttga caaaaaacgc ttatttctcc aaattattga gaattgaatg aaaaaaatac
     5881 aagggtcttg catatatgta tgtttgaaga cagattttat gttccttgat acccaaagca
     5941 ttgcatttta aatattttca ttgttaatat gtaaaaatgt ttttgaagat agagaaaatg
     6001 attgtagtat cctgaaagtg taatataatc tactcaatca acataaaggg atttcactgc
     6061 tcagataggt agctattgaa acaatacatc ttgataaata acctacttgt aaaaaatgaa
     6121 tgttttcatt tagtatttgt gatgctttaa aagaaaacat gtagctaatg tttttcttca
     6181 ttttaattgc atgtaaatga ctgttgaaat aatgatgtct ttagtttcat ttgtttgaaa
     6241 tatattcttc tcttaatcca
//
