LOCUS       XM_039095230            2025 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus elongin-A3-like (LOC120097531), mRNA.
ACCESSION   XM_039095230
VERSION     XM_039095230.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086034) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 29% of CDS bases
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 2 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-342               JAXUCZ010000016.1  14084627-14084968
            343-420             JAXUCZ010000016.1  14085081-14085158
            421-1197            JAXUCZ010000016.1  14085391-14086167
            1198-1435           JAXUCZ010000016.1  14086169-14086406
            1436-2025           JAXUCZ010000016.1  14089782-14090371
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2025
                     /gene="LOC120097531"
                     /note="elongin-A3-like; The sequence of the model RefSeq
                     transcript was modified relative to its source genomic
                     sequence to represent the inferred CDS: deleted 1 base in
                     1 codon; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:120097531"
                     /db_xref="RGD:41394525"
     CDS             1..2025
                     /gene="LOC120097531"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     substituted 2 bases at 2 genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:394..396,aa:OTHER)
                     /transl_except=(pos:1396..1398,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: elongin-A3-like"
                     /protein_id="XP_038951158.1"
                     /db_xref="GeneID:120097531"
                     /db_xref="RGD:41394525"
                     /translation="MEPGSQAGALQEILDCLCRENDPGKIYKTLKKLSSVPILCDSLA
                     EIGFRKTIKTLKNQQLLLPFVKDLVDKWSPGFVLGPQQELDSLDFGLLRSHRTVHQST
                     GLEETNQEQIFQTPRSPSLDPAENRSSEQXPAVRDPGQVPPPCKRKSELPWLEEARRP
                     PAKIRRGDSQVSKVQSPMADCASPDSRCSGKTCLAVDGVPQPSSSQLDGEASPRGWYL
                     RKNNKTPVYSGCLPADSCPQESHPGLLGKPSAGIRNASLGQSAQEETEPGQSKEKTQC
                     QTQTSKQRPSLTKPSAHLCLQESQEERLQALRARIQSSKATRLQARQTTMISFHTQHK
                     SPGQQGELGPRRGDTVPTSHSLPEAPAHPGSQKLSCLPSGAKGPKKAPAKRPAPLMAK
                     ALRDYSRGSTQTEWLMLSTVTIPATPGTGKDWAYTLSPGRTGTEHTVVVKLQTHSTAP
                     FSGVFSVPLDKIFQPXPLSHGKLYIMLQMDMEPGSQAGALQEILDCLCRENDPGKIYK
                     TLKKLSSVPILCDSLAEIGFRKTIKTLKNQQLLLPFVKDLVDKWSPGFVLGPQQELDS
                     LDFGLLRSHRTAHQSTGLEETNQEQIFQVNRVAGGPVFFGLSKCNPGWIHCLSPSCKS
                     NRDFHSQTPRSPSLDPAENRSSEQQPAVRDPGQEGIQGASFEEPLSMRGL"
ORIGIN      
        1 atggaaccag gctctcaggc aggcgccctg caggagatcc tggactgtct gtgtcgagag
       61 aacgacccag gaaagatcta caaaacactg aagaaactgt cttctgtgcc tatcctgtgc
      121 gacagcctgg cagagattgg cttcagaaag accataaaaa cgttgaagaa tcagcagctc
      181 ctgctcccct ttgttaagga cctagtagac aagtggtcac cggggttcgt gctgggacct
      241 caacaagagc tagactccct ggactttgga ttgctgagga gccacaggac agtgcatcag
      301 agcactggtc tagaagagac aaaccaggag caaatattcc agacgcccag gagtccaagc
      361 ctggatccag cagaaaacag gagctctgag cagtagccag ctgtccggga cccagggcag
      421 gtcccaccac catgcaagag gaagagtgaa ctcccctggc ttgaggaagc tcggaggcct
      481 cccgcaaaga ttcgtcgagg tgattctcaa gtatccaagg tccagagtcc catggctgac
      541 tgtgctagcc cagactctcg gtgcagtggt aaaacctgcc ttgctgtgga tggtgtcccg
      601 cagccttctt cctctcagct ggatggagaa gcgtcaccta ggggctggta tctcagaaag
      661 aacaacaaaa cgccagtcta ttcaggttgt cttccagcag actcttgtcc tcaggaatcc
      721 cacccagggc tccttgggaa gccctcggct ggcatcagga atgctagtct cggacaatcg
      781 gcccaagaag aaactgagcc tgggcagtcc aaggagaaga cacagtgcca gacgcagact
      841 agcaagcaaa gaccgagctt gactaagccc tctgcacacc tgtgtcttca ggagtcccaa
      901 gaggagaggc tgcaggccct cagagcccgc atccaaagct caaaggccac gaggctgcaa
      961 gcgagacaga caaccatgat ctccttccat acccagcaca agagcccagg tcaacaaggg
     1021 gagcttggac ccagaagggg tgatacagta ccaacttccc acagtcttcc tgaggcacct
     1081 gcccatccag gatcccagaa gctttcctgc ctgccctctg gagcaaaagg ccccaaaaag
     1141 gcgccagcta agagacctgc tccactcatg gccaaggcac tcagggacta cagccgtggt
     1201 tctacacaaa ctgaatggct gatgctctcc acagtcacaa tacctgccac tcctgggact
     1261 gggaaggact gggcatacac tctttctcct ggaagaactg gcacagaaca cactgtggtt
     1321 gtcaagctcc agacacactc cacagcaccc ttttctggag ttttcagtgt gcctctggac
     1381 aagattttcc aaccttaacc cttgtcccat ggcaagttgt acatcatgct ccaaatggac
     1441 atggaaccag gctctcaggc aggcgccctg caggagatcc tggactgtct gtgtcgagag
     1501 aacgacccag gaaagatcta caaaacactg aagaaactgt cttctgtgcc tatcctgtgc
     1561 gacagcctgg cagagattgg cttcagaaag accataaaaa cgttgaagaa tcagcagctc
     1621 ctgctcccct ttgttaagga cctagtagac aagtggtcac cggggttcgt gctgggacct
     1681 caacaagagc tagactccct ggactttgga ttgctgagga gccacaggac agcgcatcag
     1741 agcactggtc tagaagagac aaaccaggag caaatattcc aggtaaaccg agttgctggg
     1801 ggaccggtat tttttgggct cagcaaatgc aacccaggct ggatccattg cctgagccct
     1861 agctgcaaat ccaacagaga ttttcactca cagacgccca ggagtccaag cctggatcca
     1921 gcagaaaaca ggagctctga gcagcagcca gctgtccggg acccagggca ggaaggaatc
     1981 cagggtgcga gctttgagga gcctttgagc atgaggggcc tttga
//
