LOCUS       XM_039094995            1422 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus elongin-A3 member D-like
            (LOC120097440), mRNA.
ACCESSION   XM_039094995
VERSION     XM_039094995.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086034) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-186               JAXUCZ010000016.1  13674310-13674495   c
            187-187             "N"                1-1
            188-342             JAXUCZ010000016.1  13674155-13674309   c
            343-420             JAXUCZ010000016.1  13673966-13674043   c
            421-1197            JAXUCZ010000016.1  13672957-13673733   c
            1198-1422           JAXUCZ010000016.1  13672731-13672955   c
FEATURES             Location/Qualifiers
     source          1..1422
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1422
                     /gene="LOC120097440"
                     /note="elongin-A3 member D-like; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: inserted 1
                     base in 1 codon; deleted 1 base in 1 codon; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins"
                     /db_xref="GeneID:120097440"
                     /db_xref="RGD:41183091"
     CDS             1..1422
                     /gene="LOC120097440"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: elongin-A3 member D-like"
                     /protein_id="XP_038950923.1"
                     /db_xref="GeneID:120097440"
                     /db_xref="RGD:41183091"
                     /translation="MEPGSQAGALQEILDCLCRESDPGKIYKTLKKLSSVPILCDSLA
                     EIGFRKTIKTLKNQQLLLXFVKDLVDKWSPGFVLGPQQEQDSLDFGLLRSHRTAYQST
                     GLEETNQEQIFQTPRSPSLDPAENRSSEQQPAVQDPGQVPPPCKRKSELPCLEEAREP
                     PAKIPRGDSQISREQNPTADCASPDSQGCGQTCLAVDGVPQPSSSQLDREASPRGWYL
                     RKNNKTPVYSGRLPADPCPQESHPGLLGKPPAVIRNATVGQSVKEETEPGQSKEKTQC
                     QTQTSKQRQSLTKPSAHLCLQESQEERLQAVRARIHNSMAKRLQARQTTMTSFHTQHK
                     SPGQQGELGPRRADTVPTSHSLPEAPTHPGSQKLSCLPSRAIVPKKAPPKRPAPLMAK
                     AFRDYSRGSTQSDLLMLSTVTVPATPGTSKDWAYTLSLGRTGTEHTVVVKLQTHSTAP
                     FSGVFTVPLDKIFQPTPLSHGKL"
ORIGIN      
        1 atggaaccag gctctcaggc aggcgccctg caggagatcc tggactgtct gtgtcgagag
       61 agcgacccag gaaagatcta caaaacactg aagaaactgt cttctgtgcc tatcctgtgc
      121 gacagcctgg cagagattgg cttcagaaag accataaaga cattgaagaa tcagcagctc
      181 ctgctcngct ttgttaagga cctagtagac aagtggtcac cggggttcgt gctgggaccc
      241 caacaagagc aagactccct ggactttgga ttgctgagga gccacaggac agcgtatcag
      301 agcactggtc tagaagagac aaaccaggag caaatattcc agacgcccag gagtccaagc
      361 ctggatccag cagaaaacag gagctctgag cagcagccag ctgtccagga cccagggcag
      421 gtcccaccac catgcaagag gaagagtgaa ctcccctgtc ttgaggaagc tcgggagcct
      481 cccgcaaaga ttcctcgagg tgattctcaa atatccaggg agcagaatcc cacggctgac
      541 tgtgctagcc cagattctca gggctgtggt caaacctgcc ttgctgtgga tggtgtcccg
      601 cagccttctt cctctcagct ggatcgagaa gcgtcaccta ggggctggta tctcagaaag
      661 aacaacaaaa cgccagtcta ttcagggcgt cttccagcag acccttgtcc tcaggaatcc
      721 cacccagggc tcctgggtaa gcccccggct gtcatcagga atgctactgt cggacaatcg
      781 gtcaaagaag aaactgagcc tgggcagtcc aaggagaaga cacagtgcca gacgcagact
      841 agcaagcaaa gacagagctt gactaagccc tctgcacacc tgtgtcttca ggagtcccaa
      901 gaggagaggc ttcaggccgt cagagcccgc atccacaact caatggccaa gaggctgcaa
      961 gcaagacaga caaccatgac ctccttccat acccagcaca agagccctgg tcaacaaggg
     1021 gagcttggac ccagaagggc tgatactgta ccaacttccc acagtcttcc tgaggctcct
     1081 acccatccag gatcccagaa gctttcctgc ctgccctctc gagcaatagt cccaaaaaag
     1141 gcgccaccta agagacctgc tccactcatg gccaaggcat tcagggacta cagccgtggt
     1201 tctacacaaa gtgacttgct gatgctctcc acagtcacag tacctgccac tcctgggact
     1261 tcgaaggact gggcatacac tctttctctt ggaagaactg gcacagaaca cactgtggtt
     1321 gtcaagctcc agacacactc cacagcaccc ttttctggag ttttcactgt gcctctggac
     1381 aagattttcc aacctacacc cttgtcccat ggcaagttgt aa
//
