LOCUS       XM_039094969            1713 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus igE-binding protein-like
            (LOC120097411), mRNA.
ACCESSION   XM_039094969
VERSION     XM_039094969.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 12% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1407              JACYVU010000008.1  19669755-19671161
            1408-1409           "NN"               1-2
            1410-1504           JACYVU010000008.1  19671162-19671256
            1505-1572           JACYVU010000008.1  19686838-19686905
            1573-1689           JACYVU010000008.1  19689178-19689294
            1690-1713           JACYVU010000008.1  19690966-19690989
FEATURES             Location/Qualifiers
     source          1..1713
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1713
                     /gene="LOC120097411"
                     /note="igE-binding protein-like; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: inserted 2
                     bases in 1 codon; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein, and 72%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:120097411"
                     /db_xref="RGD:41011483"
     CDS             1..1713
                     /gene="LOC120097411"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: igE-binding protein-like"
                     /protein_id="XP_038950897.1"
                     /db_xref="GeneID:120097411"
                     /db_xref="RGD:41011483"
                     /translation="MGSSQSVITALETVLKQRDIKIGGRTLKNFVKEVDRVAPWFACS
                     GSFTIASWDKLGRDLDRKLAEKDLRLGTKAIWKLVKNCLADEVCKAAVVGGQTTLEIF
                     RESMSETERSERLDARKRKDVLRKKKSPPIKSADKGVLKLSDSGTSLSTQQPGGGASI
                     YPVKELEALNLDSSDSSENGILDSEEEAELDEEAARYEEEKYHPEEQKKGNKKLLPRQ
                     SPTAPPPYEACSCAFSLVPNRVRRKLQLTFPVFETQEGERVHAPVEYNQIKELAESVR
                     KYGVTANFTLTILERLALNYLTPADWQMIAKATLVNMGQYMEWKALWYEAAQTQARAN
                     DTALTPEQREWTFELLTGQGRFAADQANYHWGAYIQVSSSAIKAWKALTRKGGADNQL
                     TRIIQRPQEPFSDLVARMTETAGRIFGDAEQAAPLIEQLVYEQATQECQAAIAPRKNK
                     GLQDWLRVCRELGRPLTKEXAAILQSRQRPLKGTDTRSCFRCGKMGHLKRDYSSYVVN
                     AVNILETAGVIKTTSKYEQFTKAANLSKTLSQHLLQNWTSDFEQTLRELRAAIIQVQG
                     CVIG"
ORIGIN      
        1 atgggatcct cacagtctgt gatcacggct ctggaaacgg tgctaaagca gagggacatt
       61 aaaattggag gaagaacact taaaaacttt gtgaaagaag tggacagggt ggctccgtgg
      121 tttgcctgct caggctcgtt tacaattgcc tcatgggaca aacttggaag ggacctagac
      181 agaaaattgg cggagaaaga tctgcgtcta ggaactaaag ccatatggaa actagtcaaa
      241 aattgcttag cagatgaagt gtgcaaggca gcagttgtag gagggcagac cacacttgaa
      301 atatttcgag aaagtatgtc agaaactgaa cgtagtgaga gattagacgc gcgtaagaga
      361 aaggacgtcc tgagaaagaa aaagagccct cccattaagt ccgcggataa gggagtgtta
      421 aagctttcag attccggcac ttccctctct acacagcaac cgggaggggg agccagcata
      481 taccctgtga aagagctaga agcgctgaac cttgacagtt ctgatagctc tgagaatgga
      541 atcttagatt cagaggagga ggccgagtta gatgaggaag cagctagata tgaggaagag
      601 aaatatcacc ccgaggaaca aaagaaaggt aataaaaagc ttctgccgcg gcagtcgcca
      661 accgcacccc ctccgtatga ggcgtgctct tgcgcattct ctttagtccc caatagggtg
      721 agaaggaagc tgcagttgac gttcccggtc tttgaaacgc aggagggtga gcgggttcat
      781 gccccagtcg aatataacca aataaaagag ctggcggagt ctgtcagaaa gtacggagtt
      841 acagccaatt tcaccctaac cattcttgaa aggctggccc taaattattt gacacccgcc
      901 gattggcaga tgattgcaaa agcgacactt gttaacatgg gccagtatat ggaatggaaa
      961 gcgctttggt atgaggcggc tcaaacacag gccagagcta atgacacggc gttaacgcct
     1021 gagcagcgag aatggacgtt tgaactcttg acaggacagg gtcgcttcgc agcggaccaa
     1081 gctaattacc attggggtgc ttatattcaa gtctccagct cggccattaa ggcctggaag
     1141 gcactcacta ggaaaggcgg ggccgataat caacttactc gtatcatcca aagacctcag
     1201 gaaccgttct cagacttagt agccagaatg acagaaactg ctggacgaat atttggtgat
     1261 gcagagcaag cagcaccgct catagaacag ctcgtttacg agcaagccac ccaggaatgc
     1321 caggcggcta tagcacccag aaaaaacaaa ggattacagg actggctcag agtctgcaga
     1381 gaactcggca ggcctcttac taaagaannt gccgccattc tccagtcccg gcaacgcccc
     1441 cttaaaggga cagatacaag atcatgtttt cgatgtggaa aaatgggcca tttaaaaaga
     1501 gactattcct cctatgtggt caatgctgtt aatatccttg aaaccgccgg cgtaattaag
     1561 acaactagca agtatgaaca atttaccaaa gctgccaatt tgtctaaaac cctttcacag
     1621 catttgttac agaattggac ctcggatttt gaacagacgc tcagggaatt gagagcggcc
     1681 atcattcaag ttcaaggctg cgttataggc taa
//
