LOCUS       XM_039094204            1971 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus high mobility group nucleosome-binding
            domain-containing protein 5-like (LOC120097335), mRNA.
ACCESSION   XM_039094204
VERSION     XM_039094204.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jun 29, 2023 this sequence was replaced by
            NM_001134706.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1971
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1971
                     /gene="LOC120097335"
                     /note="high mobility group nucleosome-binding
                     domain-containing protein 5-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     1 Protein, and 92% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:120097335"
                     /db_xref="RGD:41304028"
     CDS             111..1400
                     /gene="LOC120097335"
                     /codon_start=1
                     /product="high mobility group nucleosome-binding
                     domain-containing protein 5-like"
                     /protein_id="XP_038950132.1"
                     /db_xref="GeneID:120097335"
                     /db_xref="RGD:41304028"
                     /translation="MPKRKAAGDASQEPKRRSARLSAMPVPFTPELKPKRASTSRKTK
                     TTNVVEESKDAGATTIPETKPEVVKGECNMENAENGEAKIIEAPISKMETEEVKEQIN
                     EDTEGDGGEKKEAVVTKGKNDELEANIQDVEKDEDEKEHEDTGEEGEDGEREGGLKEK
                     PDVAEIEDAKEAKDDEEKEDKEKEDDKGGDGKKEEEKDDEGEAETEEEVKEQQKEETE
                     GDDGKCKVEENKEGRKESQHEEEGKEELHEEDGKEDLHEEDGKEDLHEEDGKEDLHEE
                     EGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKE
                     DLHEEDGKEGQHEEEGKEDLHEEEGKEDLHEEDGKEGQHEEDGKKKADGNEDRKEEEE
                     QEAAAEGNDENKVEVEEEADNKDFKEDGEKGEPVSTV"
ORIGIN      
        1 aaaataccaa tccagattga aaactcagtc gctcgcggag cagtcaggca gagactcctc
       61 tcggcttttt ttccctcctg cctaaggatc tcctacggag agctgcaaca atgcccaaaa
      121 gaaaggctgc aggtgatgcg agccaggagc caaagagaag atcggctcga ctgtctgcta
      181 tgcctgtgcc ctttacaccg gagttgaaac ctaaaagagc atcaacttca aggaaaacga
      241 agaccacaaa tgtcgtggaa gaaagcaaag atgcaggtgc cacaacaatt cctgaaacca
      301 agccagaagt tgttaaagga gaatgcaaca tggaaaatgc tgaaaatgga gaagccaaaa
      361 ttattgaggc acccatttct aaaatggaaa ctgaggaagt aaaagaacag ataaatgaag
      421 acactgaagg agatggagga gaaaagaaag aagcagtggt aacaaaaggc aaaaatgatg
      481 agctagaagc aaacattcaa gatgtggaga aagatgaaga tgaaaaagag cacgaagata
      541 caggtgagga gggagaagat ggggaaaggg aaggaggcct aaaagagaaa ccagatgtag
      601 ctgaaatcga agacgcaaag gaggccaaag atgatgaaga gaaggaagac aaggaaaaag
      661 aagatgacaa aggaggtgat gggaagaagg aagaagagaa agatgatgag ggggaagctg
      721 aaacagagga agaagtaaaa gaacaacaga aagaggaaac tgagggggat gatgggaaat
      781 gcaaagtaga ggaaaacaag gaaggcagaa aggaaagtca gcatgaggaa gaaggaaagg
      841 aagagctgca tgaggaagac ggaaaggaag atctgcatga ggaagacgga aaggaagatc
      901 tgcatgagga agacggaaag gaagatctgc atgaggaaga agggaaggaa gatctgcatg
      961 aggaagaagg gaaggaagat ctgcatgagg aagaagggaa ggaagatctg catgaggaag
     1021 aagggaagga agatctgcat gaggaagagg ggaaggaaga tctgcatgag gaagaaggga
     1081 aggaagatct gcatgaggaa gaagggaagg aagatctgca tgaggaagac ggaaaggaag
     1141 gtcagcatga ggaagaaggg aaggaagatc tgcatgagga agaagggaag gaagatctgc
     1201 atgaggaaga cggaaaggaa ggtcagcatg aggaagacgg aaaaaagaag gctgacggaa
     1261 acgaggatag aaaggaagaa gaagagcaag aggctgctgc agaagggaat gatgaaaaca
     1321 aggtggaggt ggaagaagaa gctgacaaca aagacttcaa agaagatgga gagaaagggg
     1381 agcctgtgag cactgtctag atctgccctc tgtgagatca taatttggta acacgtacct
     1441 tcctgttgta atgttaatag agataaatat ttttatcaga tattttataa acagtgcttt
     1501 tctttagcat cattcaatct cagatcatca tcataccagt tattagttgc aaaataccta
     1561 acatgacacc tttatacatt ttgtgattat agtagtgcaa aataggaaat gtatacttgc
     1621 aactttgtga atttcattgt gtgtaagtta tgtattaaat ctttgagttt caactttatt
     1681 cttatacgtg gtaattttgc agagtaagag aattccaaaa gaaagagttt ggcacaactt
     1741 tgctgtagtt ctctaggttg cttttataaa gaaggtcaac tattttcagg taatgccaag
     1801 agttaggatt gccattacca aatataactg tattagtagc ttggaaagaa tataaaattt
     1861 taatttcatt tttgaagaaa tttgaatgtt tatttcagga gggcagtttt gactatatgt
     1921 gtatgcacaa agttttgctg gatttatcat aataaaacag ttccacaaag a
//
