LOCUS       XM_039092577            1139 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus collagen alpha-1(III) chain-like
            (LOC120096523), mRNA.
ACCESSION   XM_039092577
VERSION     XM_039092577.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092577.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 38% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1139
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1139
                     /gene="LOC120096523"
                     /note="collagen alpha-1(III) chain-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 62% coverage of the annotated genomic feature by
                     RNAseq alignments"
                     /db_xref="GeneID:120096523"
                     /db_xref="RGD:41022020"
     CDS             1..1113
                     /gene="LOC120096523"
                     /codon_start=1
                     /product="collagen alpha-1(III) chain-like"
                     /protein_id="XP_038948505.1"
                     /db_xref="GeneID:120096523"
                     /db_xref="RGD:41022020"
                     /translation="MGGEGKGRTRGAWAEGPQARSRRGSVRLRPSEEAGEGAAGSRAA
                     WGPSGCLGAPGLSPQPRPPAGDRGSEGGFQEGEARGATIVPGGARPRDSLLTCPRLPR
                     LFTIYLAPSPRPAGSQPAKRRRTGVTPAAGLGPQLRPGPQCFLRSPQPAATAGGSCGL
                     GLLSRSLGWGAALGAQGAPGRPGTLAPRKSAGWGDAATSQLLSVSRGSQAVPTKVSPG
                     LHLQRTVRWEMWPHTPIPLTSFSTHSWRSLLEIISPDCSYWRTPGSSRINLPRSSTCV
                     YFPKREERIFSAQPRTRRVKSLNHSVCVGEFGSRWEQGRAEHGDAQAARSAAVADRAR
                     GDQKEGGSPLSEKGLRLPLIKVLLPSPTRHFSLESE"
ORIGIN      
        1 atgggaggcg aagggaaggg aaggacccga ggcgcttggg cggaagggcc acaggcccgc
       61 agccgccgcg gctctgtccg gctgcggcct tcggaggagg cgggggaggg ggcggccggc
      121 tcccgcgcgg cttggggtcc ctcgggctgc ctaggggcgc ctggtctctc accccagccc
      181 cgcccacctg caggggaccg cggtagcgag ggtggattcc aggaggggga ggcgagaggg
      241 gccaccatcg tcccgggtgg cgcgcggccc cgcgactccc tccttacctg ccctcggctg
      301 ccgcggctct tcaccatcta cctcgcgccc tcaccgagac ccgcgggcag ccaacctgca
      361 aaacggaggc gcacaggtgt taccccggcg gcggggctag gaccccagct gcgccctggg
      421 ccccagtgct tcctccgttc cccacaacct gcggccaccg cgggcggctc gtgcgggctc
      481 gggctgctga gccggagcct gggatggggt gcagctctcg gcgctcaggg cgccccgggg
      541 cgccctggga ctctggcgcc cagaaagagc gccggctggg gagacgccgc cacttcccag
      601 ctgctcagcg tctccagggg ctctcaggca gtccccacca aagtctctcc aggtctgcac
      661 ctacaaagga cagtccggtg ggaaatgtgg ccacacactc cgatccccct cacttcattt
      721 tctacacatt cctggaggag cctcctcgaa ataatttccc cggattgttc gtactggcgg
      781 accccaggtt ccagccgaat aaacttgccg agatcgtcta cctgtgtgta ctttccaaag
      841 cgagaggaaa gaatattttc ggcccaaccc cgaacaaggc gggtgaaaag tttgaaccac
      901 agtgtgtgcg tgggtgagtt cggcagccgc tgggagcaag gtagagcgga gcacggggac
      961 gcccaggccg cgcggtccgc tgcagtcgct gaccgggcgc ggggcgacca gaaggaaggg
     1021 gggagcccgc tgagtgaaaa ggggctgcga ctgccgctca tcaaagtgct tctcccctcc
     1081 cccacgcgac acttttcttt ggagtccgaa taaaatacgg taacagaata tgacggagg
//
