LOCUS       XM_039092565            1380 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus endogenous retrovirus group K member 6
            Gag polyprotein-like (LOC120096514), mRNA.
ACCESSION   XM_039092565
VERSION     XM_039092565.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 20% of CDS bases
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1380
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1380
                     /gene="LOC120096514"
                     /note="endogenous retrovirus group K member 6 Gag
                     polyprotein-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 Proteins, and 33%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:120096514"
                     /db_xref="RGD:41266703"
     CDS             1..1380
                     /gene="LOC120096514"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:616..618,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: endogenous retrovirus group
                     K member 6 Gag polyprotein-like"
                     /protein_id="XP_038948493.1"
                     /db_xref="GeneID:120096514"
                     /db_xref="RGD:41266703"
                     /translation="MIYVLNDSGAVIAVVSVMNGNIANKKERRCSSTIASWDKLGRDL
                     DRKLAEKDLRLGTKAIWKLVKNCLADEVCKAAVVGGQTTLDIFRDSMSETERVPDRVR
                     RKLRMTFPVFETQEGERVHAPVEYNQIKELAESVRKYGVTANFTLTILERLALNYLTP
                     ADWQMIAKATLVNMGQYMEWKALWYEAAQTQARANATALTPEQREXTFELLTGQGRFA
                     ADQANYHWGAYIQVSSSAIKAWKALTRKGGAYNQLTRIIQGPQEPFSDFVARMTETAG
                     RIFGDEEQAAPLIEQLVYEQATQEYRAAIAPRKNKGLQDWLRVCRELSGPLTNAGLAA
                     AILQSRQRPLKGTDTRSCFRCGKMGHLKRDCRITKGDRRPATICARCGKGYHRPDQCR
                     SVRDIKGKLLPPLEAQPNEMSKNGSLGPRSQGPQRYGNRFQKAMTLTEETPQEVTQNW
                     TCVPPPTSF"
ORIGIN      
        1 atgatttacg tgctgaacga tagtggtgct gtgatagccg tggtgtctgt gatgaatggc
       61 aacatagcaa acaagaagga aaggagatgc tcgtctacaa ttgcctcatg ggacaaactt
      121 ggaagggacc tagacagaaa attggcagag aaagatctgc gtctaggaac taaagccata
      181 tggaaactag tcaaaaattg cttagcagat gaagtgtgca aggcagcagt tgtaggaggg
      241 cagaccacac tcgatatatt tcgagacagt atgtcagaaa ctgaacgtgt ccccgatagg
      301 gtgagaagga agctgcggat gacattcccg gtctttgaaa cccaggaggg tgagcgggtt
      361 catgccccag tcgaatataa ccaaataaaa gagctggcgg agtctgtcag aaagtacgga
      421 gttacagcca atttcaccct aaccattctt gaaaggctgg ctctaaatta tttgacaccc
      481 gccgattggc agatgattgc aaaagcgacc cttgtgaaca tgggccaata tatggaatgg
      541 aaagcacttt ggtatgaggc ggctcaaaca caggccagag ctaatgccac ggcgttaacg
      601 cctgagcagc gagaatagac gtttgaactc ttgacaggac agggtcgctt cgcagcggac
      661 caagctaatt accattgggg tgcttatatt caagtctcca gctcggccat taaggcctgg
      721 aaggcactca ctaggaaagg cggggcctat aatcaactta ctcgtatcat ccagggacct
      781 caggaaccgt tctcagactt cgtagccaga atgacagaaa ctgctggacg aatatttggt
      841 gatgaggagc aagcagcacc gctcatagaa cagctcgttt acgagcaagc cacccaggaa
      901 taccgggcgg ctatagcacc tagaaaaaac aaaggattac aggactggct cagagtctgc
      961 agagaactca gcgggcctct tactaacgca ggcttggcgg ccgccattct ccagtcccgg
     1021 caacgccccc ttaaagggac agatacaaga tcatgttttc gatgtggaaa aatgggccat
     1081 ttaaaaagag actgtaggat aaccaaggga gacaggaggc ctgcaactat ctgtgcccga
     1141 tgtggcaagg gctaccatag gcctgaccag tgccgctcag tgagggatat taagggaaaa
     1201 ctactccctc ccttggaagc tcagcctaat gagatgtcaa aaaacggatc gttgggcccc
     1261 cggtcccagg gccctcaaag atatgggaac cgctttcaga aagccatgac cctgacagag
     1321 gagactcccc aagaggtgac acaaaattgg acctgtgtgc cgcctccgac ttctttctaa
//
