LOCUS       XM_039091385            2745 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus E3 ubiquitin-protein ligase COP1-like
            (LOC120096294), mRNA.
ACCESSION   XM_039091385
VERSION     XM_039091385.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2745
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2745
                     /gene="LOC120096294"
                     /note="E3 ubiquitin-protein ligase COP1-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 42 ESTs, 1 long SRA read, 1 Protein, and 61% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 165 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:120096294"
                     /db_xref="RGD:41286775"
     CDS             1752..2612
                     /gene="LOC120096294"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase COP1-like"
                     /protein_id="XP_038947313.1"
                     /db_xref="GeneID:120096294"
                     /db_xref="RGD:41286775"
                     /translation="MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAASA
                     ATLVSGGVAPAAGSGGLGGPGRPVLVAAAVSGSASAGGAVSAGLSRLSCAARPSAGVG
                     GSSSSLGSSSRKRPLIAPLCNGLLNSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYK
                     CIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNG
                     HRWQIFQDLLGTDQDNLDLANVNLMLELLVQKKKQLEAESHAAQLQILMEFLKVARRN
                     KREDIRYSDE"
ORIGIN      
        1 ctactgttcc aaatctgtat gctttgctac ctctccttcc accagatcac cagctctata
       61 tatcctggac cttaaagaag ttttcttctc cattcccctg gtactagtta gccagtcagt
      121 atttgccttt gaagagacta atccaatgtc caacgagaat agccagctaa cctggaccta
      181 ctactccaag agttcaaaaa aaaaaataaa ctaactaagg gatgattgat gttatatcta
      241 aaataattac tatgctctgc cagaaataaa catttcagaa gtcgatgtaa attatggtct
      301 tggtgagttt tgctttaaaa actctgtacc cttcaactgg agcaccaaga gacttttcaa
      361 agtcagacca ctggccatct ggccatcaat aaaaaggact taaaactttt aatatgcttc
      421 attggctgat tatcacttta aatttcctga gttcagagtt cctaacaact gttcccaagt
      481 tacagcaatt taattcccaa gacttgagaa tgtgtacaat aatccagttt tagatatgca
      541 ctccaagtgt atgcttattc aggaccagaa ggtgcccatc tcttattccc ctttgggctg
      601 tacccactag agttgcaaga gggctgcccc tctctttgtt ccagtgacag taggaaaaag
      661 gattgtagcc ttgagtatta tagctctaat cagaggagaa aggagcctac aacagatacc
      721 tcatcagacg gatgcagaca ttagacaact tgaattctat ctgctccttg tccagacaga
      781 ggctctgaca aaagtttctt tccaaaccgg tgaggtttag actcgttttc atttcttagg
      841 gaggactttg tatgaaacta ggcgagtcct gttgcttcta tgccaacaaa cagggagtat
      901 caatgagatc ttgcaaaagg ttggggataa tttagataag tgacaatagg gacaagaatt
      961 aaataatttg atactataaa atgtttgaaa gccaaggctc acaacccttt tcagtgccct
     1021 ggctccttac tcctcctaat aggacttcag aatctaaaca aaaaaatcta aatgaaaaca
     1081 aattatattc ctgctacaca actggggaga accgcgaagc cgcaggagac caagacaagt
     1141 gagcttatta tttcccagtc catatccgca tgcgcgctcg ctcacacgca tgcgcggcac
     1201 cactgctccg caccgccgca agtttagctg ggcaatccgc cttggtccag ccggatcaca
     1261 cttaagcagt tgctttttga gcgttcccgg ttctctagac cagatccccg tcccttcctc
     1321 ttctactctt tggctccatg aaaacggcca tccttctact acgtcaggaa cgaaaccaac
     1381 tttccacacg gagaacaaga ccgtgggact ctccgcacac ttcggcgccg gcggctgcgc
     1441 gcgcagctgc tccgctgctc cgccccttcc gccgctcgag cgcaagcacg gcagcctcgg
     1501 cgcgcccggg ttggctgccc cggcggcttc cacggcagta atggcttctc tgatgtgata
     1561 gtttcccccg ccccctcgcg taggacgcgg cggtggggcg gcggtggaaa gctcaacttt
     1621 attgttcccc cggcccacct cccggcgcgt cctcaggatg ctcgggagct gagcgccggg
     1681 ggcggcggag ggtcgcggtt cgtcccggcc ctcgcctcag agcacagggc caagggaggg
     1741 agggagtcac gatgtcaggt agccgccagg ccggttcggg ttccgctggg acgagccctg
     1801 gctcctcagc cgcctcctcg gtgacttccg cctcctcgtc cttatcctcg tctccgtcgc
     1861 cgccttccgt ggcggcctcg gcggcgacgc tggtgtccgg cggggtagct ccagccgcgg
     1921 gctccggcgg cctcggcggc ccggggcggc ctgtgctagt ggcggccgcg gtgtctggca
     1981 gcgcgagcgc cggcggggca gtgtccgcgg gcctgtcccg gctcagctgc gctgccaggc
     2041 ccagcgccgg cgttggaggg agcagctcca gcctcggcag cagcagtagg aagcgacctc
     2101 tgatcgcccc gctttgcaac gggctcctca actcctacga ggacaaaagc aacgacttcg
     2161 tctgccccat ctgctttgat atgattgaag aggcatacat gacaaaatgt ggccacagct
     2221 tttgctacaa gtgtattcat cagagtttgg aggacaataa tagatgtccc aagtgtaatt
     2281 atgttgtgga caatatcgac catctctatc ctaatttctt ggtgaatgaa ctcattctca
     2341 aacagaagca aagatttgag gaaaagaggt tcaaattgga ccactcagtg agtagcacca
     2401 atgggcatag gtggcaaata tttcaagatc tgctaggaac tgatcaagat aatcttgatt
     2461 tggctaatgt caacctcatg ttggaattac tagtgcagaa gaaaaaacaa ctggaagcag
     2521 aatcacatgc agctcagcta cagatcctta tggaattcct caaggttgcc aggagaaata
     2581 agagagagga catccggtac agtgatgaat agaagtggtg ctagctgggc atcctagtct
     2641 tgatgctgat ctcaaagtga aatcattcga cgtgtcacca ttagcaattg gaacagatcc
     2701 agaaggaact aagtgttttg gaagaggata ttaaaagagt ggaag
//
