LOCUS       XM_039091214            2013 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protein PRRC2B-like (LOC120096217),
            mRNA.
ACCESSION   XM_039091214
VERSION     XM_039091214.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091214.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 16% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-268               JACYVU010000242.1  9612340-9612607
            269-1251            JACYVU010000242.1  9612644-9613626
            1252-1252           "N"                1-1
            1253-1972           JACYVU010000242.1  9613627-9614346
            1973-2013           JACYVU010000242.1  9617702-9617742
FEATURES             Location/Qualifiers
     source          1..2013
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2013
                     /gene="LOC120096217"
                     /note="protein PRRC2B-like; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: inserted 1
                     base in 1 codon; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein, and 82%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:120096217"
                     /db_xref="RGD:41010017"
     CDS             1..2013
                     /gene="LOC120096217"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: protein PRRC2B-like"
                     /protein_id="XP_038947142.1"
                     /db_xref="GeneID:120096217"
                     /db_xref="RGD:41010017"
                     /translation="MTTGMILKVQKTGPSVGGGHQPPRFHRLRRESLGLWGPEEESHL
                     LASQWPGRPKVCPGDKSGPGGHRFPELSYQNSSDHANEEWETASESLAAEPEAQGNGG
                     LSGDSLGEKKELAKRSFSSQRPLADRQSCKLEPGRFGEKPVRPGGGETSPRCESQQSG
                     TSLKVKRSPDEALPGGLGSHSPYALERTTHGSSDGSETTSKKAEKEVSLAAQRAGEQE
                     EARKQFDLGYGNAIFDNCGSSPGEENEVGSMVGEGFIEVLTKKQRRLLEEERRKKEQA
                     AQVKGRGLSSPIPPRFAKRQNGLCLEQGDVAVPGSSLGTEIWESSSQALPVQGAASDS
                     WRTAVTAFSSAEPGTSEQGFKSSQGDSGIDLSVESRESSVTSSQRSSPYGTLKPDEMS
                     GPGLAESKADSHKDQAQKQSEHKDSXQGSAQSKEHRPGPIGNERSLKSRKGSEGAERL
                     QEAVVPPVNGVEIHVDSVLPVPPIEFGVSPKDSDFSLPPGSVSGPVGKPVTKLQDVLA
                     SNAGLIQSIPILRRDHHIQRAIGLSPMSFPTADLTLKMESASKALENSPSLPEQNSPG
                     GAGSGIQPPSSVGASNGVNYSSFGGVSIPPMPVASVAPSASMPGSHLPPLYLDGHVFA
                     SQPRLVPQRIPQQQSYQQAATAQQIPISLHVESPIKNEGTMSLAGN"
ORIGIN      
        1 atgaccacgg ggatgattct gaaggtgcag aaaacaggcc cttctgtcgg aggaggccac
       61 cagccccctc gcttccatcg cctccgtcga gagtccctag gcctgtgggg acctgaggag
      121 gagtcccatc tgctggcaag ccagtggcca ggccggccca aagtctgtcc tggggacaag
      181 agtggtcctg gaggtcacag attcccagag ctttcctacc agaattcttc tgatcatgcc
      241 aatgaagagt gggagaccgc ttccgagagc ctcgcagctg aacctgaagc acaagggaat
      301 ggtggcctct ctggggacag tctgggtgaa aagaaagagc tggccaagag gagcttctcc
      361 agccagaggc ccctggctga cagacagagc tgcaagctgg agccgggaag gtttggggag
      421 aagcctgtta ggccaggtgg gggtgagact tccccccgct gcgagagcca gcagagtggg
      481 acgtctctga aagtcaaaag gtctccagat gaggccttgc ctggaggcct tggaagccat
      541 tcaccctatg ccttggagag gaccactcat ggcagctctg acggttctga aactaccagt
      601 aagaaagcag agaaagaggt ttctttggct gcccagaggg ctggtgagca ggaagaggcc
      661 cggaagcagt ttgatctggg ctatggaaat gctatctttg acaactgtgg ttccagccct
      721 ggggaagaga atgaagtagg ctccatggtg ggcgaaggct tcatcgaagt cctgaccaag
      781 aagcagcgcc gcctgctgga ggaggagaga aggaaaaaag aacaggctgc tcaggtcaaa
      841 ggtcgaggcc tttcctcacc gattcctcct cgctttgcta aaaggcagaa tggcctgtgt
      901 ctggagcaag gagacgtggc cgtgcccggc agcagcctgg gcactgagat ctgggagagc
      961 agcagccaag ccctccctgt gcagggcgcc gccagtgact cttggaggac agctgtcact
     1021 gccttcagca gtgctgagcc tggcacctca gagcagggtt ttaagagcag ccagggagat
     1081 agtggtattg acttgagtgt ggagtcacgg gagtcgtctg tgacctcctc acagcgcagt
     1141 tccccttatg gtactctcaa gccagatgag atgagtgggc ctggcctggc ggaatccaag
     1201 gccgacagcc acaaggacca agctcagaag cagtctgagc acaaggactc angacaaggc
     1261 tctgcacaga gcaaggaaca cagaccagga cccatcggca atgagcggtc tctgaaaagc
     1321 agaaagggct cggagggggc cgagcgactg caagaggccg ttgtcccgcc tgttaatggg
     1381 gtagagattc atgtggactc cgtgctgcct gtgccgccca tcgagtttgg agtcagtcca
     1441 aaagactctg atttcagcct gccacctggg tctgtttctg gtcccgtggg gaaaccagtc
     1501 accaaacttc aggatgtctt ggctagtaat gcaggactga tacagagtat tcccatcctt
     1561 cggcgggatc accacatcca gagagccatc ggcctctccc ccatgtcttt ccccactgca
     1621 gacctcacgc tgaagatgga gtctgcaagc aaggctttgg aaaactcccc cagtttgccg
     1681 gagcagaact ctccaggcgg tgcaggttcg ggcatccagc ctccttcctc tgtgggcgcc
     1741 tccaacgggg tcaactatag ctcctttggt ggtgtgtcaa taccgcccat gcctgtggct
     1801 tctgtagcgc cttctgcttc aatgccaggc agccatctcc cacctctgta cttggatggc
     1861 cacgtttttg caagtcagcc ccgactggtt cctcagagga tacctcagca acagagttac
     1921 cagcaggccg ccactgccca gcagatcccg atatcccttc atgtggaaag ccctattaag
     1981 aatgagggca caatgagttt ggcaggcaat tga
//
