LOCUS       XM_039090112            4305 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mucin-12-like (LOC120095955), mRNA.
ACCESSION   XM_039090112
VERSION     XM_039090112.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090112.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 6% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4305
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4305
                     /gene="LOC120095955"
                     /note="mucin-12-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 94% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120095955"
                     /db_xref="RGD:40984024"
     CDS             481..4305
                     /gene="LOC120095955"
                     /codon_start=1
                     /product="mucin-12-like"
                     /protein_id="XP_038946040.1"
                     /db_xref="GeneID:120095955"
                     /db_xref="RGD:40984024"
                     /translation="MTHTTSLTETSTTSPGGPISTQGTQTSEKPQTIFTQETTTYPHT
                     TISTETAVPPDTSPSTAVTGTFTTSTTVPVSTQETQATDTSQTALTQESTTFPPSTLS
                     TDTSVPPDILLSTALSDYFTTSPTITVSTQEPRETETSHTMFTPGSTTFPTSSQSTER
                     AVTSHTSLSTETSGSSAISSSSSISTQTTGGTETSQTVFALGSTTFPTSSRSTETTLL
                     PESSYTSLLNEASTPVPRTSVSSQTMGTSQRVFTQESTSLTGSSGSTETTVPSDTSFT
                     TATTEAPQTWTSSQISTLGTPPTENPQTIVLTQGSTTYPSRPTSTETTVPTDTSTTTA
                     QTETSAASASSPISTPRSQTASQTVLTEESTTWRSSSISTETAVAPETSFSTALTDVS
                     TASPARTASTNETHGTVTSQTGFTPGSATFPTSSWSTEPAVTSETSYTSADNEASTAS
                     PSTVISTQATQTIGTSQTVPTQESTTLPTESVSTETAGSPPMTHTTSLTETSTASPGA
                     PISTQGTQTSEKPQTIFTQETTTYPHTTISTETAVPPDTSPSTAVTGTFTTSTTVPVS
                     TQETQATDTSQTALTQESTTFPSSTFSTDTSVPPDILLSTALSDYFTTSPTITVSTQE
                     PRETETSHTMFTPGSTTFPTSSQSAETAVTSHTSLSTETSGSSAISSSSSISTQTTGG
                     TETSQTVFALGSTTFPTSSRSTETTLLPESSYTSLLNEASTPVPRTSVSSQTMGTSQR
                     VFTQESTSLTGSSGSTETTVPSDTSFTTATTEAPQTWTSSQISTLGTPPTENPHTIVL
                     TQGSTTYPSRPTSTATTVSPDTSPSRALNDTSSTSPWFLISTQGTQATETSQTVFSPV
                     SLTFPTRSWSTERGITTETSFNSTMSDPSTPSPRNPVSTQVSQTTETSHTVFPQESIS
                     FPTASISTETSVPPEVTHTPFPPEAYTTFPSTPVSTQETQSTQTSQTVFTQESTTFPT
                     RLVSTETAVTHITNQPEGATTHPSSLMSTLRTPPSQTDQTTIFPQETVTSQSSPISIE
                     SSVPPEVSHISALTEASATSSPSRPTSTQATQASETSPTAFPQASTTFPSSGISMDTS
                     HPTSSSQSTTIPAESTFSIPASSETSPTFSTLPLKDCKNGNWNGRQCECQSGYTGQLC
                     DSMLFSFPVEFPNVINATVTVIVKVIERNFTADMKNMSSQDYKNFTDLFLSQMDKVFK
                     GDDLPQYKNVIIRKLLNGSIVVESDVVLEASYTPEYETLFRNATEIVKGKILNETNTI
                     TTDHSLCQRKSF"
ORIGIN      
        1 actacagcac aaactgagac atctgcagcg tcagccagca gcccaatttc aacaccacga
       61 agtcaaacag cttcccaaac agtcttgact gcggaatcca ccacctggag aagcagctca
      121 atttccaccg aaacagctgt agctcctgaa acatcgttct ccacagcgct gactgatgtg
      181 tctacaacct ccccagcaag gactgcttca actaacgaaa ctcacgggac tgtgacttcc
      241 caaacagggt tcactccggg atctgccacc ttcccaacaa gctcgtggtc cacagaaccc
      301 gctgtaactt ctgagacctc ctacacttca gctgagaacg cggcttctgc agcttcccca
      361 agcacagtga tttcaactca agcaacacaa acaattggca catcccaaac tgtccccact
      421 caggaatcta caactctccc gacagagtca gtttccacag aaacggctgg atcacctccg
      481 atgacccata ccacgtctct aacggagact tccacaacat ctcctggcgg cccaatttca
      541 acacaaggaa ctcaaacctc tgagaagccc caaaccatct tcactcagga aactactacc
      601 tacccacaca ccacaatttc cacagagaca gcggtgcctc ctgacacctc accctccaca
      661 gctgtgactg gtacattcac cacctccaca acagtcccgg tttcaaccca agaaactcaa
      721 gcaaccgaca cttcccaaac agccctcaca caggaatcaa caacgttccc tccaagcaca
      781 ctttccacag atacatctgt acctcctgac atcttgctct ccacagccct gagtgactac
      841 tttacaacct ctcccacaat cacagtttca acacaagaac ctcgtgaaac tgagacttca
      901 cacaccatgt tcacaccggg atctacaacc ttcccaacca gctcccagtc cacagaaaga
      961 gctgtcacct cccacacctc actctccact gagacgagtg gttcatctgc catctcttca
     1021 agcagctcaa tttcaacaca aaccactggt ggaactgaga cttcccaaac agtctttgct
     1081 ctgggctcta caaccttccc caccagctct aggtccacag aaacaactct acttcctgag
     1141 tcctcttaca catcgctcct gaatgaagct tctacccctg tcccaagaac ctcagtgtcc
     1201 agtcagacaa tggggacatc ccaaagagtc ttcactcagg aatctacatc actgacaggt
     1261 agctctggtt caacggaaac caccgtccca tctgacacct ccttcaccac agccacgact
     1321 gaggcccctc agacctggac aagcagccaa atttctaccc ttgggactcc accgactgag
     1381 aatcctcaaa caatagtctt gactcagggg tctacgacct acccaagcag gccaacttcc
     1441 acagaaacaa ccgtgcccac cgacacctcc accactacag cacaaactga gacatctgca
     1501 gcgtcagcca gcagcccaat ttcaacacca cgaagtcaaa cagcttccca aacagtcttg
     1561 actgaggaat ccaccacctg gagaagcagc tcaatttcca ccgagacagc tgtagctcct
     1621 gaaacatcgt tctccacagc gctgactgat gtgtctacag cctccccagc aaggactgct
     1681 tcaactaacg aaactcacgg gactgtgact tcccaaacag ggttcactcc gggatctgcc
     1741 accttcccaa caagctcgtg gtccacagaa cccgctgtaa cttctgagac ctcctacact
     1801 tcagctgaca acgaggcttc tacagcttcc ccaagcacag tgatttcaac tcaagcaaca
     1861 caaacaattg gcacatccca aactgtcccc actcaggaat ctacaactct cccgacagag
     1921 tcagtttcca cagaaacggc tggatcacct ccgatgaccc ataccacgtc tctaacggag
     1981 acttccacag catctcctgg cgccccaatt tcaacacagg gaactcaaac ctctgagaag
     2041 ccccaaacca tcttcactca ggaaactact acctacccac acaccacaat ttccacagag
     2101 acagcggtgc ctcctgacac ctcaccctcc acagctgtga ctggtacatt caccacctcc
     2161 acaacagtcc cggtttcaac ccaagaaact caagcaaccg acacttccca aacagccctc
     2221 acacaggaat caacaacgtt cccttcaagc acattttcca cagatacatc tgtacctcct
     2281 gacatcttgc tctccacagc cctgagtgac tactttacaa cctctcccac aatcacagtt
     2341 tcaacacaag aacctcgtga aactgagact tcacacacca tgttcacacc gggatctaca
     2401 accttcccaa ccagctccca gtccgcagaa acagctgtca cctcccacac ctcactctcc
     2461 actgagacga gtggttcatc tgccatctct tcaagcagct caatttcaac acaaaccacg
     2521 ggtggaactg agacttccca aacagtcttt gctctgggct ctacaacctt ccccaccagc
     2581 tctaggtcca cagaaacaac tctacttcct gagtcctctt acacatcgct cctgaatgaa
     2641 gcttctaccc ctgtcccaag aacctcagtg tccagtcaga caatggggac atcccaaaga
     2701 gtcttcactc aggaatctac atcactgaca ggtagctctg gttcaacgga aaccaccgtc
     2761 ccatctgaca cctccttcac cacagccacg actgaggccc ctcagacctg gacaagcagc
     2821 caaatttcta cccttgggac tccaccgact gagaatcctc acacaatagt cttgactcag
     2881 gggtctacga cctacccaag caggccaact tccacagcaa caaccgtatc tcctgatacc
     2941 tcaccctcca gagccctgaa tgatacatct tcaacctctc catggttcct aatttcaaca
     3001 caaggaactc aggcaactga aacttcccaa acggtcttca gccctgtatc tctaaccttt
     3061 cctacacgtt catggtctac agaaagaggt ataactactg aaacctcatt caattcaaca
     3121 atgagtgatc cttcaacacc ttctccaaga aacccagttt caactcaagt gtctcaaaca
     3181 acagagacat cccatacagt cttccctcag gagtccatat ctttcccaac agcatcaatt
     3241 tcgacagaaa catctgtacc acctgaggtc acccataccc cctttccacc tgaggcatat
     3301 acaactttcc ctagcacccc agtttcaaca caggaaactc aatccactca gacttcccaa
     3361 acagtgttca ctcaggaatc tacaaccttc cctacaagat tggtttccac agaaacagct
     3421 gtaacccaca tcacaaacca acctgaggga gctacaacac acccaagcag cctgatgtca
     3481 acactgagaa ctccacccag tcagactgac caaaccacaa tcttccctca ggaaactgtg
     3541 acctcccaaa gcagcccaat ttcaattgaa tcttctgtac ctcctgaggt cagccacatc
     3601 tcagccttga ctgaggcatc tgcaacctcc tccccaagcc gtccaacttc aacccaagca
     3661 actcaagcat ctgagacatc tccaacagcc ttcccacagg catctacaac ctttccaagt
     3721 agtgggattt caatggacac tagtcaccct acttcgagct ctcaatcgac caccattcct
     3781 gctgaatcaa cattttctat cccagcatca tcagaaacat cgccgacttt ttccactctg
     3841 ccactaaagg actgcaagaa tggaaattgg aacggcagac agtgtgaatg ccaatcaggc
     3901 tacacgggtc agctctgtga ctccatgctg ttttccttcc cagtagaatt ccccaatgtt
     3961 attaacgcta ccgtaaccgt gatagtaaaa gtgattgaac ggaacttcac agctgacatg
     4021 aagaacatgt cctcccagga ctacaagaac ttcacagacc tcttcctgag ccagatggat
     4081 aaggttttca agggtgacga ccttccccag tacaaaaatg tgatcatcag aaaacttctc
     4141 aatggcagca tcgtggtgga aagtgatgtt gttctagagg caagctacac cccagagtat
     4201 gagacactgt tcagaaacgc cacggagatt gtgaagggca aaatcctgaa cgagactaac
     4261 acaatcacaa ctgaccactc cctgtgccaa cgtaagtcct tctga
//
