LOCUS       XM_039090110            6308 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mucin-3A-like (LOC120095953), mRNA.
ACCESSION   XM_039090110
VERSION     XM_039090110.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..6308
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6308
                     /gene="LOC120095953"
                     /note="mucin-3A-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 ESTs, 2 Proteins, and
                     94% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:120095953"
                     /db_xref="RGD:40994669"
     CDS             348..6308
                     /gene="LOC120095953"
                     /codon_start=1
                     /product="mucin-3A-like"
                     /protein_id="XP_038946038.1"
                     /db_xref="GeneID:120095953"
                     /db_xref="RGD:40994669"
                     /translation="MLLLILLWLLRASPGEAGTPSMTTAASPSRMLGAEAASSALSRT
                     PHAGGTPQWLLSPHQSPNPALNSGEDTPRTAGMTSNLKLTYKSLLSPDTVTAPMYKFV
                     MKVETNPPTVLVYMSTTEYIPVSGFSIITSHPTTTCVTMTYVPFTNSYTTTPRTDTSV
                     TAITTTSPTVSMGKVTSSMTSASTVTDMGGIPTITSPPPSSVSTIHTTQGALTSSTTG
                     TTGMTTMTPTGIHTTWLTYQSATVPSQIPTTTSLTTITDNTAPPSTTGIITKPFPTAS
                     SSLKTETSSTRSLGSTNKSTLITSVAKERTSHSGEPSVGVTITSSGKTTHKPMSNTPR
                     EVVSTASSYPPTPTTSSANMVTISTSDMATSMTTSHVTSPPSTFLPSASSDIDSTSKT
                     PTPGTVSISSSSGLVETSRTTDIRSSHGPDIPTTVSAATSHLPVDTTGFMATMISLGS
                     AKTAPYGTLTSETLPPSEDTQTPTRTSLTTSSVDNTVSWGTMTDFTSAQEAPSTLVTH
                     TNFISSSSTSEITNTLLNKSQPSTSSVLPTLLSTENSGNTSTLNTSVPVTSTLSPSIL
                     PGSSGTPQIDSVPSAPTITQTVHVAAESTPTPTTLTTLTAPTPTGPPPPTSAVTGTDH
                     SPFPSHAATFTGDTTLDPTTDLPMDSLQTELTTTPPTPSLVVSTDVWLSERSSPPSPL
                     STNVITSPTGSMLSSSPALDTQSVTTGMVYTTPFATLTTMLPITSAVSTAVSQVNSPS
                     FPNTTVGHSTSDITSPTTTTLTLTPDTPVTPTTWPTTETSGTATTRSVTTTTPTSLHS
                     TPGLTTSDSYSMHRTSTATSASHPNTPGTLETLTSIASSSSSVSLSTVTATDLPSSST
                     GNSGSPTVVLTSPHTHSSISTTHTSIAPSSLLVNSTAITTPVSTPDTDTPSTAAAFGS
                     TGNTQPHSLPVSMPALTLSTSMAEVSLGNTQTESTALSNPHTLRTTTEWLPTPTSTPS
                     TEPLLTTARLTPTTDLLTESLMTEITATSQIMSPLTPSDPLVNTKVVTSPTTTALSSV
                     SISSMHPVTTDITHSALSSTLETAFPASSALSTGTSQATDFSSSTNAMTALTSEISSP
                     PSFTDTLAPDISFTSTWPLLPTSEIARTSTTHFVTTTTRTLSLVTSGLTTFNIYSTDR
                     ISTTPTTSDVRDTGAPTASPTMDVSTIPTTSLITSSTSDAVPLVTTDIPPTHEGSITS
                     TAHTTHVPFLSSSQNLETTPFMTSTPLAPSRTATPSGTGNNSSPFATNLPVTSASSLS
                     LSTGRTGTSQTGSTPSSSTFPHSLDTTVDSTPTATTTNTFTTATSIKQPPTNPPVTSI
                     FFTTIMTPTRKATMTSPTDLSTWSLMSEVATTTSSSSSLAPSDTLTSGEFKTSTSPHT
                     SGVPSSTFVPNSQPITADSTHTLPLSTLVTTLPTTSATSLTTPLISFPSSPTRSVTES
                     VPHYTSPSYTTDTTDSSSTTRPSQLTSVTEETVTTYTATQATSLRLSTFTNVESYVTD
                     STSAVSSLPITHPVTATASSRTPTSIMAEPLLTTGGAHTLRASSTPPTHGLSSSIHSS
                     TETQLVSTQHTPSTSTTDNPSNTGNPSSQPVTRTPGITAFSSSISASSALTSTANGVL
                     PSVSDSSTKLVTAGPTLSTTISALETTLLVTQATSAATPEVTSPNSVSSSVTHSPSHN
                     ISPTSTLGTSSPDTSAPPSWPSTLPSETRSDVTTQMTTMATTPSWPSLTSLNSYPTIS
                     LSMTDISLTPVSSDTTGTLTHKIPSTHSSGLPTMTDTALTSSSMGFTEPLTTASHTAT
                     LTVPSLSPTDSTPSNPTSGHTVTTLVYTAHTTSSVTAVPVSTGNSPPPLASSSPAASA
                     SSSTISASTVGTTQSVSVPSAPTITHTLPSSPESTQTPTALTTLTTPTSVETSLPPSA
                     VTGTDQHPIPSLTATSTGKTTENAATGLPTDSLTTYKIPRHLCHTVMALHTPFRNKHH
                     TDDHHGHHSQLAQPHLLKQLPHCQLVHD"
ORIGIN      
        1 cgaagcttca ggcttcgttc tggtgtatgc tttacaggag gtagcgggag gaaggcggcg
       61 tccttggaaa ggatggagcc atgggggaca ggcagactaa gggtggggct ctcccacctg
      121 gcccctaacg ggcctgccct agcttcctgt tccctccctt tctacagcac tgaggtccgg
      181 gagaagagag ggaggttgcg cagctcaaag gtgaaagtgt tccgttttca agcttggcag
      241 ggccaaaaac tagtctgctg agttgaagcc aggatccagg gctcccggct cccacagttc
      301 ccacacgtgg ctctggatct ggttctgctc ccagacggct gacgctcatg ttgctgctca
      361 ttctcctctg gctcttgaga gcctcccctg gggaagcagg aactccatcc atgaccacag
      421 ccgcctctcc ctcacgtatg cttggtgcgg aagcagccag ctcggctctc agcagaacac
      481 cgcatgctgg gggtacacct cagtggcttc tcagccctca tcagtcccct aatccagctc
      541 tcaacagtgg ggaagacacc cccaggactg ctggtatgac cagcaactta aagctcactt
      601 acaagtcatt actcagtcct gacaccgtga cagccccgat gtacaagttt gtcatgaagg
      661 ttgagaccaa tcctcctact gtcttggtct acatgtccac caccgagtac attccggtct
      721 ctggcttctc aatcatcacc tcgcacccca ccacgacctg tgtaaccatg acctatgtac
      781 ccttcaccaa ttcttacacc accactccca ggactgacac atcagtgaca gccatcacta
      841 ctacatcacc taccgtctct atggggaaag tgacctcatc catgacctct gcttccactg
      901 tcactgacat gggtggcata cccacaataa cgtcaccacc tccttcttct gtctcaacca
      961 tacacacaac ccaaggtgct ctgacttctt ctaccacggg gaccacagga atgaccacca
     1021 tgaccccaac aggtattcat acaacatggc ttacttatca gtctgctacc gttccttctc
     1081 aaattcccac gacaacctct ttaacgacca taacggataa cactgcccca cccagcacca
     1141 caggcattat taccaaacca tttcctacag caagcagttc gctcaaaaca gaaacttcct
     1201 ccacccgttc cctgggttcc accaataaat caacactgat tacttctgtt gctaaggaaa
     1261 gaaccagtca ttcaggtgag ccgtccgtag gggtgacaat aacaagctct gggaaaacta
     1321 cacataagcc catgagcaac actcccagag aggttgtcag cacagcttct tcttacccac
     1381 ccacaccaac gacatcatct gccaacatgg tgacgatttc cacatccgac atggctacct
     1441 caatgaccac cagccatgtg acatcaccac caagtacgtt tctgccatct gcttcttctg
     1501 atattgactc aacctccaaa acacccacac ctgggacggt ctcaatttcc agttcctcag
     1561 gacttgtgga gacttcccga accacagaca tacggtcttc ccatggtcca gacatcccta
     1621 ccacagtatc agcagctacc agccacctgc ctgtagacac gacaggtttc atggctacaa
     1681 tgataagtct cgggtcagca aaaacagccc cctatgggac actcacatct gaaaccttgc
     1741 cacctagtga agacacccag acccctacga ggacaagtct caccacatca tctgtggaca
     1801 acactgtttc gtggggcacc atgacagact tcacctcggc ccaggaagct cccagcacgc
     1861 tggtaacaca caccaatttc atttcatctt cctccacatc agagatcact aatacacttc
     1921 ttaacaaatc tcagccctct acttccagtg tgctgcctac acttttgagt actgaaaatt
     1981 ctggaaacac aagtaccctt aatacaagtg ttccagtcac atccacactc tctccatcca
     2041 tccttcccgg cagctctggg accccacaga ttgacagtgt cccctcagct ccaaccatca
     2101 cccagacagt ccatgtggca gctgagtcca ccccgacacc cacaactctc accacactca
     2161 cagcccccac acccacaggg cctcctcctc ctacatcagc ggtgactggg acagatcact
     2221 cccccttccc cagccacgct gccacattta ctggagacac cacactggat cccaccacag
     2281 accttcctat ggattctctc cagacagaac tcaccacgac ccctccgacc ccttctttag
     2341 ttgtctctac agacgtgtgg ctttctgagc gatccagccc accctctccc ctgagcacta
     2401 atgtgatcac atcacccaca ggtagcatgc tttcctcttc tcctgcccta gacacacaat
     2461 ctgtcaccac tggcatggta tacaccaccc ctttcgctac cttaacaaca atgctcccaa
     2521 ttaccagtgc cgtgtctaca gcagtgtccc aggtcaactc ccctagcttt ccaaacacca
     2581 ctgttggaca cagcacatca gatatcacct ctcctacaac caccacactc acactgaccc
     2641 ctgacacccc tgtcacaccc accacctggc ccaccacaga aacatctgga acggctacca
     2701 cacgctctgt caccacaacc accccgacat ctttgcacag cactcctggc ctcacaacct
     2761 cagacagtta ctctatgcac aggacgtcca cagctacctc tgcctcacat cccaacaccc
     2821 ctggtactct agagacactc acatctatag cctcatcctc ttctagtgta agcctctcca
     2881 cagtcacagc cacagacctc ccttcctcat ccacaggaaa cagtggttca cctactgtgg
     2941 tactcacctc accccacacg cattccagta tatccacaac ccacaccagt atcgccccat
     3001 cttcccttct tgttaatagc acagcaataa caacaccggt gagtaccccc gataccgaca
     3061 caccgagtac agcagctgct tttggaagca ctggaaacac ccaaccacat tctctccccg
     3121 tcagcatgcc tgccctaaca ctctccacat cgatggctga ggtcagtttg gggaacacac
     3181 agacagaaag tacagctctg agcaaccccc acacactgcg cacgacaaca gaatggcttc
     3241 caacacccac aagcacccca tctacagagc ctcttttaac cactgcccgc ctaactccca
     3301 ccacagacct ccttacagaa tctctcatga cggaaatcac agccacgtcc cagatcatgt
     3361 ctccactcac accctctgat ccactggtga acaccaaggt ggtcacttca cctactacca
     3421 ctgctctgtc ctctgtgtct atctcaagca tgcatccggt caccacagac atcacacaca
     3481 gtgccctgtc atccaccttg gagacggcat tcccagcttc cagtgccttg tccacaggta
     3541 catctcaggc caccgacttc agctcttcaa ccaatgccat gacggcgttg acatcggaga
     3601 tctcctctcc accctccttc acagacacgc tggcccctga catttctttc acatctacct
     3661 ggcctttgct acccacctca gaaatagcca ggacgtctac cacacatttt gtcaccacga
     3721 ccacccggac cctatctctt gtcacttccg gcctcacaac cttcaacatc tactccacag
     3781 ataggatctc cacaactcct accacttctg atgtgaggga cacaggtgca cctacagctt
     3841 cacctaccat ggacgtctcc accattccaa ctacatctct tattacatcc tctacaagcg
     3901 acgctgtccc actggtcaca acagacatcc ccccaaccca tgaaggttct atcacgtcaa
     3961 cagcccacac cacacatgtc ccttttcttt caagctccca gaacttggaa acaacaccat
     4021 ttatgacttc aacacctctg gcacccagta ggacagctac accctcaggc actggaaaca
     4081 actcgagtcc atttgctaca aaccttccag tcacatctgc atcttcgttg tccctctcta
     4141 ctggcagaac aggaaccagc cagacaggta gtacaccctc atcttcaacc ttcccccatt
     4201 ctcttgacac aacagttgac tccaccccaa cagccacgac caccaacaca ttcacaacag
     4261 ccacatccat caaacaacct cctactaacc caccagtgac tagcatcttc ttcaccacca
     4321 ttatgacacc cactagaaaa gccacaatga cttcccccac agacctttcc acctggtctc
     4381 tgatgtcaga agtggcaacc acaacgtcca gcagctcttc cttagcccca tcagatacat
     4441 tgacttccgg ggaattcaag acctccacct caccacacac aagtggggtc ccatcctcga
     4501 catttgtccc aaactcacag ccaatcactg cagacagcac acatactctc ccactgtcaa
     4561 ccttggtgac aacactccca actaccagtg cgacatctct aaccacacct ctaatctctt
     4621 tccccagctc tccaactagg tcagttacag aatccgtacc ccattacaca tctccttcct
     4681 ataccacgga caccactgac agctcttcaa ccaccaggcc ctctcagctc acttctgtga
     4741 cagaggagac ggttaccaca tacacggcta cccaggccac ctccctcaga ctttctacct
     4801 ttacaaatgt agagagctac gtgactgaca gcacttctgc ggtctcctcc ttacctatca
     4861 cacaccccgt caccgccaca gcctcatctc gcacccccac atccatcatg gctgagccat
     4921 tgcttaccac aggaggcgct cacaccctca gagcctccag cactccacca acccacggcc
     4981 tttcttcctc catccactcc agcacggaaa cacaactcgt gagcacacaa cacaccccgt
     5041 ccacaagtac aacagataat ccctcaaata caggaaaccc cagcagtcag cctgttacaa
     5101 ggactccagg gataacggca ttctcctcct ccatctctgc cagcagtgct ctgacttcca
     5161 cagcaaacgg ggttctgccc tctgtctctg actcaagcac aaaactagtc acagctggtc
     5221 ccacactcag cacgacgata tctgccttgg agaccacact cctagttaca caagcgacat
     5281 ctgcagctac acctgaggtg acctccccca actctgtcag tagctctgtt acccattccc
     5341 catcccacaa catttctccc acctcaacct taggtacaag ttccccagac acctctgccc
     5401 caccctcatg gccctccacg ctcccttcag aaacaaggag tgatgtcacc acacagatga
     5461 ccaccatggc caccactccc agctggccca gcctcacctc cttaaacagc taccccacca
     5521 tcagcttgtc catgactgac atctctttaa ctcctgtcag ttcagacacc acagggaccc
     5581 tcacacacaa aattccatca acacatagct caggcctgcc caccatgaca gacacagctc
     5641 tcacctcctc atccatgggc ttcacggagc ccttgaccac agcgtcacac actgccaccc
     5701 tcacagttcc cagcctgtct cctactgact ccaccccatc taatcccacc agcgggcaca
     5761 ccgtaaccac tcttgtctac acagcccaca ccacgagcag tgtgacagct gtccccgtca
     5821 gtactggaaa ctctccacct ccccttgcct cgagctcccc tgctgcatct gcctcctcct
     5881 caaccatctc tgccagtaca gtagggacca cacagagtgt cagtgtcccc tcagctccaa
     5941 ccatcactca tacactgccc tcctcacctg agtccaccca gacgcccaca gccctcacaa
     6001 cactcacaac tcccacctct gtagagactt cccttcctcc ctcggctgtg actgggacag
     6061 atcaacaccc tatccccagc ctcactgcca cttccactgg gaaaaccaca gagaatgctg
     6121 ccacaggcct tcctacagac tcactcacga cgtacaagat ccccagacac ctctgccaca
     6181 ccgtcatggc cctccacact cccttcagaa acaagcacca cacagatgac caccatggcc
     6241 accactccca gctggcccag cctcacctcc ttaaacagct accccactgt cagcttgtcc
     6301 acgactga
//
