LOCUS       XM_039090092            3892 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus collagen alpha-1(I) chain-like
            (LOC120095931), mRNA.
ACCESSION   XM_039090092
VERSION     XM_039090092.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 42% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3892
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3892
                     /gene="LOC120095931"
                     /note="collagen alpha-1(I) chain-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 1 EST, and 84% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120095931"
                     /db_xref="RGD:41127121"
     CDS             1..1404
                     /gene="LOC120095931"
                     /codon_start=1
                     /product="collagen alpha-1(I) chain"
                     /protein_id="XP_038946020.1"
                     /db_xref="GeneID:120095931"
                     /db_xref="RGD:41127121"
                     /translation="MALMGGPLVCLASGNLDHQLRRPLTLLVRFTTGFPTPIGTPLPE
                     TSSSPPPPTKFLPLFLEGPSWGRSGNSGRKLPLPALLPDTQPISASRQSGRRTNQYVF
                     SGGARRLADAYAPRLLRDGPWAAEAVAAARAGAALARPLAARPTSCGCGADPEAAAAV
                     PGWRHVIVPRRAAGLCAAAAAAAAEGDGASAEPGQVSSRLLPARCRPAWGRAACPCFA
                     ASAAPPPSAGRGPPGLARPLARRPLYSRQAARGPHGCGTGAATARPGQACRAGGGDHG
                     GRTRSEGSAGVAREGPDPPGCHGHRAPTPPAPARPLGPLLRPGCSPQPLGRPARLEQP
                     GWACACRDSVAGVRGPPAVPRVAATSGSRAPLGARGWPPRPHPTPTNFPTRARSTRLL
                     SRTPELPTLERTPERRGGQPGVLGLGEEPGSSFPSEKKRVCFPPSGSLSLGHGEPTYL
                     EEKAGGRDRIQMFEMKI"
ORIGIN      
        1 atggctctaa tgggaggccc attggtgtgc ctggccagtg ggaacctaga ccatcagctc
       61 cgaagaccgc tgacgctctt ggtcaggttt actacaggct tccccacacc cattggaact
      121 cccctgccgg agacttcttc aagcccccca ccccccacca agttcctccc cctatttctt
      181 gagggtccca gctggggccg ctccgggaac tccggacgga agctgcccct ccccgccctg
      241 ctgccggaca cccagccaat cagtgcgtcc cgccaatcag ggcgtcggac caatcagtat
      301 gttttctccg gcggcgcccg gcgcttagct gacgcctacg caccgcgcct cttgcgcgac
      361 ggcccctggg cggcggaggc cgtggcggcg gcgcgtgcgg gcgcggccct ggcgcgcccc
      421 ctggcggccc ggccgacgag ctgcgggtgc ggcgctgacc cggaggcggc ggcggcggtg
      481 cccggatgga ggcacgtcat tgtcccccgc cgggcggctg ggctgtgtgc ggcggcggca
      541 gcggcggcgg ccgaggggga tggagcgagt gccgagccgg gtcaggtaag ctcccgcctc
      601 cttcccgccc gctgcaggcc ggcgtggggc cgggccgcgt gtccctgctt cgcggcctct
      661 gccgctccgc caccttcagc cggccgcggc ccgccgggac tagcgcggcc cctcgcccgc
      721 cgccccctct acagccgcca ggcggcccgg ggaccccacg gctgcgggac cggcgctgct
      781 accgcccggc cgggccaggc ctgcagagca ggaggcggtg accacggcgg gcggactcgc
      841 agcgaaggca gcgctggggt tgcacgggaa gggccggacc cccctggttg ccatggccac
      901 cgcgctccca ccccaccggc cccagcccgc ccccttggtc cgctgctccg gccaggctgc
      961 agtccgcagc ccctgggccg cccggcgcgt ttggagcagc cggggtgggc gtgtgcatgc
     1021 cgggacagtg tagccggcgt ccggggcccg cccgccgtcc ctcgcgtggc tgccacctcc
     1081 ggctccaggg cgcccctcgg agctcggggc tggcctcccc gcccccaccc cacccctaca
     1141 aactttccca cccgggcgcg gtccactcgg ctcctcagca gaacacccga gttgcccaca
     1201 ctggagcgga cacccgaaag gagaggcgga cagcccgggg tgttggggtt gggggaggag
     1261 cccggtagct ctttcccctc cgaaaaaaag cgagtgtgct ttcctccctc aggttcttta
     1321 tctttggggc acggagaacc aacttacctg gaggaaaagg cgggtgggag ggatcggatt
     1381 cagatgtttg aaatgaaaat ttgaccggac caaagtttta caatctagga ctttaacctc
     1441 cctagaatga atacagttga gattactttt gttgaatagc tcttttatat ttgaaggcct
     1501 taggacttgc ttgtttgtgt ttctttccag taaatacact caagtaacaa gaagtgttag
     1561 gaaactagtt aacgcccctt ttacaaagta acaactggat tcaggttctc acagctagct
     1621 gtctatggga ggatactttt cttcaaagcg tgcattttaa acggtctgct tttaccatgt
     1681 cactcattca gatgcttagg tctgtgaaga atgagttaca cttacttgtt tttactcagg
     1741 gacagtttca ctttcttttc tgtaatcatt ggctcaagac tacaatattt ggtttgcaaa
     1801 gttttacagc taatcatttt gtttacctaa atacaattaa aaatcaagtg gtatcttttt
     1861 aaagtttctt aaaacggaaa tgttacaaga acttgtataa tattgtttat aaagaactcg
     1921 cacatgacag tgttgacctt atttcttgag tgtatgtgga gtgacacaat gtttaaatag
     1981 tgatactctt taaaatgaga aagaataaat gagaagagta aatgtagcct ggtattcact
     2041 cattgtaaaa gagatagaag caagtaaaag tccttagtct tgcacattta ttcaactgta
     2101 gtccctgttc aggtctcaaa tggactgttg taactttgta tatcatgaaa aggtgttggg
     2161 gaggggactc aactttaatt aaagtaaact ttcaaagtcc attttgaaca ctaactttca
     2221 gaagcttttc ttagaataaa aataggagcc acatgaatcc tgacttacac agtatagttg
     2281 ggttttaaaa aggttgtctc tattataggt ggagtttaat ttgatccccg gtggttttag
     2341 ggtgagattt cattggctga atttctaagt gaagaagatg aatggatttt gttattcttg
     2401 ccagaatcaa aacaatagca tacttattga tgacttgatt tgtgttttcc ttaatatgta
     2461 tctcctaagc ctattactct gcttttgtta gaataaatag tgttttgttg ggctgtttgt
     2521 taatcgttgt atggaaaggt tgcttgtccc aggaaaacca aggggttcca ctattaatgt
     2581 tactttaaat aaggatagac taacctttcc ttattaccaa attttggctt tctttaactc
     2641 ttcctcctgt tcctttcctt tcatcaacac acacacacac acacacacac acacaccaat
     2701 ttcttttgcc tgtagcatga gaaatgtata aactttattg gatgataggc ccaaattttc
     2761 ttgtaaatga aggtgattta tatttatctt caattaagta ttcaagttgg ataatttact
     2821 ttctgatttt atgtaactgt ccctacattg tttaggttgt actttacttg aattaaaatt
     2881 tttaaacaag gaggttgaaa cttttaagaa acaatttatg taagcaccaa gcacatggtg
     2941 atatctgttc accgaagtgg caagttcatg agtattttat taccttttgt tctttaaaat
     3001 ggtgattttt tttttaaagg ccaaagttta gctgttttaa agaattaaat gaggtacatg
     3061 atatatgtca ttcagcacaa actggtgcta aaagcaaaca ctagttactt tctgtttgtg
     3121 tgatttcatt catttgttga gtgcatgttt ggaaagcttc cccatgccag gtagggtgga
     3181 gtaagtcctt actgcatgct accatagaaa tcatcacaag tagtttttaa gattgacttc
     3241 tgacccaatc ttgaggtgaa aggcgttgtc aaggaaaccc tttaagatgg gtttctaatc
     3301 cagtcttgga atgaaaggaa ttgtaggaga acgcattcca gaggaatgag ttctaaacct
     3361 gacaactgaa agtgttaact ggccagaggt agagagatgg agaagaacat gtaaagaaga
     3421 gcttgcagca gctcagacag agcagggact aaaaatggac cctgtctgtg gtgggaacat
     3481 gatgtgcaga gtgttccaga gactgaaaga tgctgggaag aacataggaa ggccggggag
     3541 cacccctaaa aggtttcttc aaggtgtgac gtgtagatgt ggctgcctgg acattttgag
     3601 ggccacccta aagcacttcg ctgacttagg ttgcataatg gctagacaac cgccctgctg
     3661 ggtggtggct cagtcactga ccttgcagat tttggctgat ttttcaaagg tttatcatga
     3721 aaatttagca agtaaatgca tatttagtta ttaataggat acccaacaca ttgaaaaact
     3781 caattagtag atttaaaaat gagattcaga ggggttgggg atttagctca gtggtagagc
     3841 gcttgcctag caagcgcaag gccctgggtt cggtccccag ctccaaaaaa aa
//
