LOCUS       XM_039090016            9376 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus paired immunoglobulin-like type 2
            receptor beta (LOC120095902), transcript variant X1, mRNA.
ACCESSION   XM_039090016
VERSION     XM_039090016.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9376
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..9376
                     /gene="LOC120095902"
                     /note="paired immunoglobulin-like type 2 receptor beta;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 1 long SRA read, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 26 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:120095902"
                     /db_xref="RGD:41111820"
     CDS             2419..3081
                     /gene="LOC120095902"
                     /codon_start=1
                     /product="paired immunoglobulin-like type 2 receptor beta
                     isoform X1"
                     /protein_id="XP_038945944.1"
                     /db_xref="GeneID:120095902"
                     /db_xref="RGD:41111820"
                     /translation="MKTQDDQGCPLNPCSGFRFSLSFPGNSAGYQKMQDYGVDQPAVL
                     NGFQGSSIEIPFSFYFPWELAKDPQMSIAWRWKNFHGEFIYKSTLSFIHEHFKDRLIL
                     NWTQGQTSGVHRILNLKENDQAIYFSKVCLQTTEGMKCWQSIPGTKLNITHALSTTMR
                     TPSIITSADPTAGLEDIRGQRNPSLLNLGAMVGMVVAKVVVIIPLYGWMIFLWWKKRP
                     AE"
ORIGIN      
        1 agtgctctac cactgagcta aatccacaaa ccctagattt ttttttgaga caaattttta
       61 ctatgtagtg ttgctgccct gaaactggat acatagacca gactggcttc aaactcagag
      121 atattcattt gtctcttccc atagcagggt tcaaatagaa attcaattga gtccaaaaca
      181 tgaaactagg acagacccat gactcaggat taaggagcca gtaggtgaca gcagtggagc
      241 agggcacaag gggcagctgg gatcctgtag actcaccagg gcctattgtg taaaaatact
      301 gaggcttagc acatgacata tgagagcctc atcaggtcca tccccttctt gcatgagtca
      361 gcaatggtgt ttgcccagag gccccagaga gtaaaggaaa ggcagatgaa atctagaggt
      421 gaggactcag gaccaggagg gcatcctcac agacctcact gcagctaaga atgtggttca
      481 tgtggtagag ctggcctggc atgcacagaa gtaaacattt tatgtcctac aggagataaa
      541 gggacctgat ggtgctcacc tgtagtccct gttcatggga agtcaaggta ggtggatctg
      601 tagtccttca tggtcatctt tagctagata aaaagttcaa gtaacagctt gggctacttg
      661 agataaaact tacacacaca cacacacaca cacacacaca cacaattctt tgtgacaagg
      721 accgtagccc tagaccttcc atgtatggcc aactcatccc aaaggttctg tgcctcagtg
      781 tctccaaggg tactatggat atgtgcagct ggcagggagg ccatgagaga ttgtttctgg
      841 ctcaggacaa tgtatctgag gagcacagga acacaagtag gacagagaag cagacatgag
      901 agagggcagc ctacatagcc agcttcaggg aaacttggac aaggcagcca atgccaggaa
      961 agtaaggaaa tgggatgatg cctctgcaca tgctacagag ataataatgt cacttcctct
     1021 gatacaatca tgtcttcctg cccttcagaa tgctgatgtc attgtgtcct ggggaagggt
     1081 aggaagaacc tccatagaac aagtgctgag gcccccacag cctctgctcc cacctctcat
     1141 gtcttcaccc aagtcacagg ccagctgtgt ccactgtcag acatatccca ggcattatgt
     1201 cttgagtgac agacacatgg cttctctgag ccttcttttc ccatttattc caaagaaatt
     1261 cctggaataa ctttctaaag aaagcaactg taacaagaga gagtcagtca agagctttat
     1321 gaaaagagcc tcctcagagg ctgcactgag tcagccgatg gaagtctctg tgaggaaagg
     1381 aagactataa taactcaatg tgactaacat ccagtcaatc agccatgtga tagtcatgtg
     1441 acttctgcca tggcttctgt gatccttgct atcctgttat gagtgactgt tatgttggtg
     1501 gagagagaga ggaatgggat gctggtagaa aggcttcttt aaaaacttga ttagatttag
     1561 agtcattgtc ctcttgccca gggaagttgg agactgtgcc acagggagca ggccaagtca
     1621 aaagagagtc aaccaggact tggttctgcc ggggcactgt gaggggcacc taaaagacac
     1681 aaaaatgcca aagcacagct ggggtgcagg gagggggaag gaggagaatg ataaggggag
     1741 gtcattgtgc tagggggact gaaagtgttt tctcatcacc accttcttca ttatgtctga
     1801 agtggttaag agactgacca cttcattatg tgagattatt agagagacac agtaaccatc
     1861 atggtgggag acataataca gaagagattg agatggagag ggaaggaata gaggaaatat
     1921 agaggaaagg ggcagagtga ttaacaagcc acttaggaaa tggaataaag tagataaggc
     1981 agacagtcaa ggtggaaaag aagagagcca accatgccaa ggactagggt gtgtctccca
     2041 gccaaaaatg caggcccaag agccctgtta tgttgtcagt aaccacaaga gcggatcttc
     2101 tgcaatatgg gaaaagcaga agccagatca ataaggaagt tgctggccac aaggaggtgg
     2161 agatggagag gtcctgccca actcagtcct ccacttgaga aggtccaagc atgtgtatca
     2221 ctttaccctg attctctctg gactgctgag tgccccagtg tccctagcag ggcatcaatg
     2281 ccttcctgac aacccggctg ccctcacttc ctggacggaa tctggctgtg gctcagactc
     2341 tccttctttt gctgttggca gcatgtctgc acactgtcat agggacagtc ctgccctgtg
     2401 tcccacccct ccctgcagat gaagactcag gatgatcagg gttgtccttt aaatccctgc
     2461 agtggcttca gattctccct gtccttccca gggaactcag caggatatca aaaaatgcag
     2521 gactatggtg ttgaccaacc agctgtcctc aatggattcc aaggcagctc cattgagatc
     2581 cccttctcat tctacttccc ctgggagttg gccaaggatc cacagatgag catagcctgg
     2641 agatggaaga acttccatgg ggaattcatc tacaagtcca ctctatcttt cattcatgag
     2701 cacttcaagg accggctcat cctaaactgg acacagggtc aaacatccgg agtccacaga
     2761 atcctgaact tgaaggagaa tgaccaggcc atatacttca gcaaagtttg tctgcaaaca
     2821 acagaaggca tgaagtgttg gcagtctatt cctgggacaa aactcaatat tacacatgct
     2881 ctcagtacta ccatgaggac cccctccatc atcacctctg cagaccccac agctggcctg
     2941 gaggacataa ggggccagag gaatccttca ctgctgaacc tgggagccat ggttgggatg
     3001 gttgtggcca aagttgtagt catcatcccc ctctacggat ggatgatctt cctgtggtgg
     3061 aagaaaaggc cagcagagta acacctaaac cccagccagg aggcagacat ctcatccaaa
     3121 gcccgacccc caccccacat gctacacatc aagtgtcaga ccaaggcttc ctttcctcac
     3181 aagctcaact gtatgcactc acattctcat ttcctaccat gtcggcattc tggactctgg
     3241 gttctctcct ggaataggac atttgtcgca agtccaatct gtcctaacat ttgatagcac
     3301 attaacttct aataaaaccc tgtggggaca cagaaaacca tccagagtga cccaggagga
     3361 atgaaaccag gcttctcatg acagaagaag ttcatggaca tgctcaatac agatctacca
     3421 acgacagtga gccataattg aagtggcaca aatacagctc cagttcacca atcacaaggc
     3481 tcaaatgagt atcatccatg ggtgttttct gggtaattgg ggaaactgtt cccaatccca
     3541 tgaggcaagc tagagctact tggggtcgtg aaaaggtcac caagactcat gtggctaaag
     3601 tgaagcctcc tggagcagct atgaggtatc tactgttgtg actgcatcct aacaccctaa
     3661 gactgaacac agcagctctc atgactacag ggacctttgg agcagggatg atactttctc
     3721 tgagcattcc tgaagggttc tcacagcagg atgccatgat ggtagtctgc ccagccataa
     3781 caaggagtcc atttgtcagg tccatgcctc aggcatctgt actcagagaa ggggccttaa
     3841 tccacttgct caaatgtgac ttctcaggtc ctttttcatt gctcaagagg gaaaatcaag
     3901 agacaaaacc agagcaaaga cataaagaaa caacgttctc aacaacatag gtgcttaagc
     3961 tccagttgaa tacatttagg cagactgtat ctctgatgtg ccaaagggaa cattatgggc
     4021 caactagaag ttgacactgg tttctgccct ggtgacaagt gtttggtatg tgtgttccct
     4081 agactgagat gattggtaaa aaaaaaagta ctaaaagaaa ttgggaatca aaacatgcct
     4141 gtcatcccta ctattgacag gtagtgatgt gaagattgtc aattggaata ttggttctca
     4201 acctgtgggt cactacctct ttgaagttag aaggacattt tcacaggagt caaatttcag
     4261 atatcctgaa tatcagatgt ttatattatg atcataactg tagcaaaatc aaagtcatga
     4321 attaccaatg aaataatttt atggttggag tcaccccaac atgaggaaat atcacagcat
     4381 tacaaagctt gagaaccaca gaattggagg ctattcttgg tacctcttga gtttaggcca
     4441 gcctgggttg catgagactc tgtctttaaa tcaacagcaa agcctaacaa aactgaaaac
     4501 aataaagagg gtcatggata aaggtcctca gctccctttt ggttagagat ggagaactcg
     4561 aatatagcac cagtattctc tccagattta cataaaaaat tgtgactgcc aatactttag
     4621 tttttgcatg tttgtttttg tttccttctg tgtctgagga gggggtttct ctattatata
     4681 ggtcagttct cctggaactt gctttacaca caatggctgg cctcaaagtc agaaaatctc
     4741 ctccttctgc attctataaa atgtacctcc atgccagggg attaacacat ttctggcttt
     4801 tgttcattta tttgttttgg ttttggtttg ttttaaccta aatataataa atctgagaga
     4861 gggtgggagt ttgtctgctt ctgtgaccac aagcttgatg acacatttat aaatgtctct
     4921 gttcttggct atcagcagat gttggagggg tctgagctcc tccccgagtc ccattcacct
     4981 ggcctttagg gcacagtata gagcctagtt ccaggaacac cctgggtagg ggttcacgca
     5041 ggagctcatc tgaggctgag gagcaggtga ggcagatgaa gatgatgatg tcatcctagg
     5101 gaagaaacac aaggtcagat ggcagcaggc agctgtgcta ttgtaaagat taagctgcag
     5161 cctgtgcatc ctgtatatac cacaagctgc cgtcctctct agcttctcca ctctcctcag
     5221 gcaccagtcg gagtgttact ttgacgctgg atctatgtgt tgtcaccaag gaagagagat
     5281 caatgagagt gtgtgtaagg aagtagtgaa aagactggag aagacaggga caggtttcat
     5341 ctatgagggt atctactgaa cccacagagc ctagagtagg cattatctga aggatggttc
     5401 tggaattgaa tcatccacag acaaacagga aggtttgagc ctgttttctc cctctgctgt
     5461 catgggataa gttaattggg tataaagtca gagtccgaat gctgtagaca atgaaaagaa
     5521 ctagattctg aagaataaca gagcctggac atagggaagc tttgtttagt cagaataaat
     5581 acggggttaa tatgtggtgg cagatcagct atgaaaggat ccttacatga tttgtttctg
     5641 agatccagtg cacgtgtgtg caagtcagtt tgggctcgtg tacagaagtg cagaggacaa
     5701 cctcaggtat ggtaattagc aacaccatcc aaattcacca taaattttgt gtttctgttt
     5761 ttgattggtt ggtatttagt ttgatacata ggctatttta ggtttggctg ggattccttg
     5821 gtttatgttg ttgggttttt ttttgtttgt ttgtttattc ttccatacaa gctttcacca
     5881 ggcaagcttc aaactcactg agatccatgt gcctctgcct tcctcctacc aaattcagac
     5941 ttgaagcatg tatgtgtatg tctatcatgg gttatgatat tttaaataac aattattcat
     6001 tctggggtgt gtggtgtggg tagggaccca tgtgcctgag catcacacat attccaaccc
     6061 tgcaggctga cattccccgt ggtcctgcga tatgcaaaag ccccgtgtgc accccaaaac
     6121 cacagacttc cggtcccaaa tgagagcatg acttgggatt aaggagccag caggtggcag
     6181 cagtgcagct gagcacaatg ggtatttggc atccttagaa cccatcagag cctgttgtat
     6241 acaaatgctg gggtccagca gctgacttat ggcagttctg tcagttccag tccccttctt
     6301 gggtgggtta gttatcagat gaccttctgc ccacaacctc agacagacaa agtaaggcag
     6361 atgaatctgg aggtgagttc tcatggccag gaggacattt gtacagactt cactgaccca
     6421 aagatgttca tctggtagag tgctttcttg cctgtcatgg acagaaaatg atgttctttg
     6481 tccactgtga aacaaaggag caggatggtg cacacttata ttcaccacta atggaaggca
     6541 gagacgagag gatctgtggg agttccagat catccttgaa tacataacaa atttaagggc
     6601 aagcttggcc aagccacagc ctaaatacct gtcagttgag cacctgtccc taaggcaggt
     6661 tgagaccctt tgaggaagtt tagtatgaga agcatgcaag gtagcaagag agatgattca
     6721 gctagagagg tgtacatggg tagcaggacc tgagtttgac ttagagcagc cacactataa
     6781 gtcagggata tggcaggaat ttgtaatccc agccctgtat gagcaagaga cagggagagt
     6841 catggggctg accatgtagc tactcaagac taattggtaa gtcccaaacc gatgagtgcc
     6901 atgatataaa aaaaatgtag atttctcaag atggtcaatt atggtcataa ccttttataa
     6961 atttatgtta aatgaagtat tttaaaatga tatattaatg aacagtgtaa tcagtgagaa
     7021 atctcagtgg aaatggagcc tgctgcctag cacagtgacc tgggtgtgat tcctggtgac
     7081 ttaaatggta catggagaaa actgactgtg gacaattgtc ctctgcctct caggatcact
     7141 cacagacccc tggtaagaca tcatctgttt gtcctcagag aacagacttt ctggtgccag
     7201 gatctcgcac caggtaggtg agttacttca aagtagtgat tgagggcaca ccccctgcat
     7261 accactatcc tccctgtctc ctgtatagga ataagagccc atggattcag gattgtgtgt
     7321 gacacatcct aagaatccat gtcagctctg atgtcgtctc tttagaaacc atgtcatcct
     7381 gtctgtctct ggtcctgaga gcctgactgc tgttctctgt gaatttttaa attttttaat
     7441 aaatgtggaa tcgtaaatca ataaacttga gtaggttcag agtaatactg agatcaagac
     7501 aagttcaaac cagaaaatct cattctgtga ccagcagaag ttaggactgt gccctgcttg
     7561 ctctagtctg catgttcaga tccaagaagc ccataccacc gccacctctg ccacccttga
     7621 aaaagtaata acaagatggc tgaattacag ctcttccttc ccctctctcc atagacacat
     7681 gtccatcaag cacctggaat tcctcctcag gcaattgaag gttcctcaga acctcagcat
     7741 aagccaataa tgcacagtca tcctataacc aataatcaat caataagttt catatagacc
     7801 ttgttaccca actaaaagac agctgcttaa ctgatagaaa tacacagaag cctgtttctc
     7861 aacaggattc aatctagaag agatcctgtc aacccatcaa cacagataag tttagttcct
     7921 ttcattccag ccctgagttc aacttgcctg catacattga ggtcagaaga agaaccaggc
     7981 aaacaaataa aagtcttact ccaagcaatc tatcaggaag tttctgtaga cactcttctc
     8041 ccatatgaga cctctaagtg agttgcagcc tgtctccaga atacaagtca caggagaggg
     8101 acaaggtcca tgttccaaat tgagaaccat agattgataa tatatccctt ctccctagcc
     8161 atttccatct cacccagagc cttgatcccc ttatgtttca catccagtga aagaccatgg
     8221 gttgcttaat cccatgtggg gattcctttc ctcacaggtt tagctataca cactcacttt
     8281 ctcattttct gccatgttga tattctgaat tccgggttat ctcctaggac aggtcttttt
     8341 tcccatgtct actctgtctt aacatttgat agtcagcaga tcagcctctc ccagaaaacc
     8401 tgttgaaaca ccagaaacca tccagagtga cccatggata aagatctacc aaccacattt
     8461 agccatagct ccagtgtgga acagatgtaa ctccagtcta acaatcacaa gtctcaaatg
     8521 ggtgttattc atgggccttt gatgaggcat tgggaaaatg atccccaata ccatgagact
     8581 agttctagat aactgggtcc atggagaggc caccaaagct cgttgtagct aaagtgaggt
     8641 gtcctggggc agctctgagg tgtctgcagt ggttgtgact gcatcgaagc cttctgaggt
     8701 tgaactcagt agctcttatg ggcacagtga tcatggaagc aagggtgatg tttcttctga
     8761 gcatccctga tgcgttctca cagcaagatg tcatgatggt gatctgtgta gtcatccaaa
     8821 gtggtgcatt ctcagctcaa caccgcaggc aactgcacac agaaaggggc ccttaatgca
     8881 gttgctcaaa tggtcatgtg acttcccagg ttcttttcca ttgctcaaat gggaaaaaat
     8941 atagacaagc ccacagcaac gtttcacaca gagccaacat actcaacatc agaggtgctt
     9001 accgctgatt gaatacactt agggagagtg gatctgtgat ttgctacaag ggaaatttat
     9061 ggtccacgtg gggagatgtt ggcttctgcc ctggctacac ttattcacaa tgtgtgtttc
     9121 tagcctgagg gaacagtagg aaaaagtact aagaggaact tgggcatgag aacaggatgt
     9181 cgctgcagta ggctggagca gcttccagtg acaaaagctt caggagagaa tactcttccc
     9241 ttagggtgtt acagttcagt aaaacaggca gcctcagatg gctttggtga aataacttat
     9301 gctctttatt ccttatggat acaatcttat aaatgtattg gggtgggggg tctaaaggca
     9361 gatgctttct attggc
//
