LOCUS       XM_039084311            5559 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus atherin-like (LOC120094582), mRNA.
ACCESSION   XM_039084311
VERSION     XM_039084311.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 35% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5559
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5559
                     /gene="LOC120094582"
                     /note="atherin-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, and 91% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120094582"
                     /db_xref="RGD:41320964"
     CDS             1..1329
                     /gene="LOC120094582"
                     /codon_start=1
                     /product="atherin-like"
                     /protein_id="XP_038940239.1"
                     /db_xref="GeneID:120094582"
                     /db_xref="RGD:41320964"
                     /translation="MDSFDDYFQSANFINPPLKFRQKRVRSMPRAENSIFSNRVGARE
                     RGKNKIQHQRKPWVSNFIAQRAERKAGRTLRLAERAPPRRRQHLHLLCPQLSPSSSSS
                     SSTPHGHPGGGPGGQPGTTRASERASRRAAAARNGGRRRAASPGAAPLRSGSAPGPAR
                     RRERGRQLAAAGRPLARTPPRPPPAMSAAAGCRQSRCRPAAAGSTPPPLFFVRCERRR
                     CSGARAEAPSLPRPLLRGEGPERGCPAPPRPPSVPPALSGSCLLLLLLLPVVQAPPSL
                     LSFAARISLEFYSLPHVTHRVKLHLRRVTHQHSASPSRPGHRQQQPPPTEEPQPGSQP
                     APPSAECAAATHGNSRARPGAAREAPPPRYLRNLPKAFGFFRALRRGWLGKAGEGGLR
                     PVLEERSYPRYGGWRLRTPAEEIWRKRGLCVARWGDSPGWRGLAGNPRAV"
ORIGIN      
        1 atggatagtt tcgatgacta ttttcagagt gcgaatttta tcaatcctcc attaaagttc
       61 agacagaagc gtgtgagaag catgcctagg gcagaaaaca gcattttctc caaccgcgtg
      121 ggagcaaggg agaggggcaa gaataaaata cagcaccaga gaaaaccttg ggtttcgaac
      181 tttattgcac aaagagcgga gagaaaagca ggtcggacgt tgcggctcgc cgagcgggca
      241 ccgccgcgaa ggcggcagca ccttcacctc ctctgccctc aactgtctcc ttcttcttcc
      301 tcctcctcct ccacccccca cgggcaccca ggcggcggcc cgggcggcca gcccggcaca
      361 accagagcga gcgagcgagc gagcaggcgg gcggctgcgg cgaggaacgg ggggcggcgg
      421 cgggcggcct cccccggggc ggctccgctc cgctccggct ccgcgcccgg cccggcccgg
      481 cggcgggaac gcgggcgcca gcttgccgcg gccggccgcc cgctcgctcg caccccgccc
      541 cggccgcccc ccgccatgag cgccgccgct ggctgcaggc agagtcgctg ccgcccggcc
      601 gccgctggct ccactccgcc gccattattc tttgttcgct gcgagcggcg gcggtgtagt
      661 ggggctcggg cggaggctcc atctttaccg cggcccctcc tgcgagggga aggccccgag
      721 cgcgggtgtc cggcgcctcc ccggcccccc tccgtccccc cggctctctc cggctcctgc
      781 ctcctcctcc tgctcctctt accggtggta caagctcctc cgtcactgct ttcgttcgcg
      841 gcccggatct cgctggagtt ttattctctc ccccacgtaa cacaccgcgt caaactacac
      901 ctccgccgcg tcactcacca acactcggct tctcccagcc gcccgggcca caggcagcag
      961 cagccgccgc cgactgagga gccgcagcca gggagccagc cagcgccgcc cagtgccgag
     1021 tgcgcagcgg ccactcacgg aaacagccga gctcgacccg gagccgctcg agaggccccg
     1081 cccccgcgct acttgcggaa cctaccgaaa gccttcggct tcttccgggc actgcgaagg
     1141 ggttggttgg ggaaggcggg agaaggcgga ttaagacccg ttctggagga acggtcctat
     1201 cctcgctatg gcgggtggag gcttcgaacg cccgctgagg agatttggag gaagcggggt
     1261 ttgtgtgtgg ccagatgggg ggattccccg gggtggcggg gacttgctgg aaacccccgc
     1321 gcggtctgat cctgcagcgg aagcaggccg cccgggaact ttgacgcgcc gcctgggccc
     1381 agaaccctgc ggacggcgtt ggaaggttgc aaacgccggc cgccggccag gggaatatgc
     1441 cgagaactat cagcacgggg ccaagctggt tctatctggg aagaaagcta tggcacacgt
     1501 ggcacatggg attcagctct actttggaga tagcccctgg acttctgtag cactggtgag
     1561 aaggataaag gcccttgcca ccaagccaga taatctaagg tcaactgcca gaatccacgt
     1621 ggtagaagga gagaaccagc tcccacaagt tgccctttga cctcagcact tacatcacag
     1681 taagcagtgt gtgtggctaa tacataaaat agagaaactt cctccttaag cccctctcca
     1741 agttccaccc gtctcttgtc atccctctcc atctgcagtg gctctgaact gtcacattct
     1801 tgtctgtgta gttttgcgtc ttgcatttac aagtccatct tagagcattt gatgctgttt
     1861 gactcttcca aacacactct cccctcttct cttgccagtc ttccttttaa ccctaaaccc
     1921 caacaactag attctccttt ctctaactcc tgtgctggaa tcgtctgagc cctgatcctc
     1981 cacaatccta ccgtagtctc ttcccctaag tggtctcatc ctcttctact tgcttcaaat
     2041 gccttctccc agactctcca gtcttaggcc tcaccctcag actctaaagt cctcttccca
     2101 gcagcctctg gtccatgtgg ctggatgatg agagtatgga gtcctactca ccttgagttt
     2161 tcatatcccc tcctaccctt cctcccacgc tccttcgctc agtaaagaac gtctattcag
     2221 atacgctaga aaccgagccc acttctgata ccagttagta tcccctagat tgtctgcttc
     2281 ctgaaatgct ggtggcgttc gctgtgtcca catgcgttct ccaccactct taagctgcct
     2341 tcatctctgg cttggagtcc tctaaacctg tccccgcctc actccagtct gtttgccagt
     2401 ttgctgtcaa atgaattgta gtgacacaga tccatccagt caggtcactg agcttcctaa
     2461 agccctgcaa gtggtttctt tttgcttcat aaacacaggc taaagctcca ttctctggac
     2521 ttgcctctca tatctcctcc atctgtctcc ttaacattag ataagtcttt aaggatattc
     2581 tactggctag ttagttcttg tcaattcgac acaaacctag atatacatac ctaagagact
     2641 ctcaactgag tgattgcctc aatcagactg ctctgtaggc atgtttttaa ggatattctt
     2701 aattgatgat tgatgtgggg gtgcccaacg tactgtgggt ggttccactt ctgggcagat
     2761 agtaatatgc tgtataagaa agcaagctaa gcaatatgtt ggtgggtaag atgtcagtgt
     2821 agacgatttg tcgtactagt ccagccatta gctaatgact ctgcgtaaat agtttgctct
     2881 tgtgactctg tctccccatc cgtaaaataa agtagcacct atgtcctaat gctgttgtga
     2941 ggatgagaga tggtaatcca gacgtactaa gcacagtgtt tcacgtgtct tgaatgcata
     3001 gacatgctgg ctactactaa ttttctttgg ctctcttgtc cttctgtcaa acattgtttt
     3061 aagcatttgt gtttgttgtc atcctgctat ttttcttact ctggccttct atataatgct
     3121 aacatcttac aactttctgt ccatgtcata tatcaccctc tgggaccatt ttttgttgtc
     3181 agcttgacac aagctaggat catctgggaa gaaaaaacct caactgagaa aatggctcta
     3241 tcagattgtc ctataggcaa gctagtgcaa cattttcatg attaatgatt gatgggaagg
     3301 ggatgtggca gttcactgtg gacagtgtca ccccctactc agatagccct ggaaaatata
     3361 tatatatata tatatatata tatatatata tatatatata tatatatgca accttaagcc
     3421 atggaaagca agccattaaa caacattcct ctatggtctg agcttcagtt cctgccatga
     3481 gttcctgcct tctctttgtt gaactgttga tctgggagtt gtacactgaa ataaaccctt
     3541 tctgttccac gttggtttgg gtgggggcag tgtttattac agcagtagaa agcaaactaa
     3601 gacatcctcc aaactttcaa ccctgccttt atgtgcacct ttccctttta ttcacattga
     3661 cctttattta ggccttggtt tttcccacct ttgtcaaaca cagtctagtg caggcctgtc
     3721 cggtcttttc cacctgcacc atactgtcag accaagagga cctaaacact ttagttatat
     3781 tgttttctgt ctctgtaccc aggtgaactc attcacccaa ggcaagttgt tctgctgtac
     3841 ttttgggcac aatctaagtt tgaaatctgg tcttctcatg tataccctgc ttaagcttca
     3901 gtctgtatac catatacata aaccaggaat gctaaacttt caaacataca atttgtgttt
     3961 ctgggacttg aagtcacccc tatttttcag gactcttaga agataaggtc ccttattagg
     4021 ggtgaagaaa ggatgaaagt aggccacgtg gatataactt gacacagtaa aagatgcagt
     4081 gtcttcaaag aggtgcagga ggggaacatc ccatgcgatg actatgaaag gcttcaggca
     4141 gagagtgtac ttgagagctt ttctctaacc acagctccct tttgctgtta tttccctctc
     4201 ttgcttctgc tgagaggaat tttcaccttc atggggttca agttttttga acctgcctat
     4261 tccagtccat cactccaatg gcttgatttt ctttcctttc taaccccgaa accaggatga
     4321 tctattttat tcaacttaaa attctctgtt gaacaccaac tttgtgccat gcacttttct
     4381 agaaaatgga ggggcagcag taaatagaac ttactgtctc tgctcttaca gggaccaaag
     4441 tagtcaaact gtctgcttgt tcattccttt gtatcctcag tctcatgatg gtacccaccg
     4501 accttcatgt ctaccaggtg cctatattaa caacacttat gtttccatct ttctaaatcg
     4561 atctcccaaa ctgtgactca tttaaacaac ccaaccccaa catgactatc cacttagata
     4621 ttgtcttagc ctatgatctc ccaggaggca gaacctgagg caaaggcctc tgtactattt
     4681 tcttagagag cagaatctca ggaaattgga gaaaaggaca ggccaggatt cagtcaaagg
     4741 catgctaaca ccactctccc tccatctcag gaacgcacgc aaacttctat tttgtgtgga
     4801 tgtccaactc tttgaagatg tgttgcctgg gcacaaggca gtgttattgg gtctactgcc
     4861 agaggtcagt tgtccagcag caggacagta gccaaaggcc ccaaagaacc acaagcaagg
     4921 ctgtgaccat ctaaggtaca gtaagtgtct actataccag actttagtca gtctgttcaa
     4981 aatagagggg tagttcccat cggggggcct ccgcctttcc tatcttaatt agtgaggtta
     5041 aaatgttggc tgcttggtac aacctatctt tgttccacat ctcttccaaa agggaacctc
     5101 actggtaccc taaaaatata tccccagata tatttgtgca ctgacacttc ccagtgcaca
     5161 tgagtccggt ccataccaac cttcatctct ttcctggatt gttacaaagc atcctgagaa
     5221 aactgccatg acatccttta cttcctgctt caggcacatt aaactcttcc tttatactga
     5281 aaaggtttgt tttcagagag cctacactca tccttccgat ctttccacca agtgagtctg
     5341 atgttttact gaggcttttc tcatacagct tcaagttcaa cctgacacca tacaatatca
     5401 gttttctgga atccctttgc cttgtcccca accaatctac ccactctctc cctcctgcct
     5461 gccctggcat caagccttca ctgaaccaag ggcctctcct cccattgatg cccaacaagg
     5521 ccattctctg ctgcatatgc agctggagcc atgggtcat
//
