LOCUS       XM_039082810            1790 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class Y like 1 (Pigyl1), mRNA.
ACCESSION   XM_039082810
VERSION     XM_039082810.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086026) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 26% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1790
                     /gene="Pigyl1"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class Y like 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 9 ESTs, 199 long
                     SRA reads"
                     /db_xref="GeneID:120094334"
                     /db_xref="RGD:41167939"
     CDS             1..849
                     /gene="Pigyl1"
                     /codon_start=1
                     /product="uncharacterized protein Pigyl1"
                     /protein_id="XP_038938738.1"
                     /db_xref="GeneID:120094334"
                     /db_xref="RGD:41167939"
                     /translation="MREENRFSTVGVGVPEDRTQLLRLGRKRPYSLSPLIGPNYYFDI
                     HQFKRKTTDRTRSPLLQRLGDGGCDQTTGAEPERRSEGVVRCPMSTRGSAPSRDLGFL
                     PRPLRDLIGRLARVLRLRRAVTVTARRSRDPDIYRPVNGEFRVSRSDTGGGAVGTGWD
                     RTRASKASAPRTPPVPLGWLVHFRFGRVLLCPVRLGPVLSGLARFSPAWLGSLRPGHR
                     YPRSARDCSGTRVPLRVPEATGPRAGAVFTLCIDDGRLVTRLRVPVLVPSRSSSYGKP
                     PLRCLK"
     polyA_site      1790
                     /gene="Pigyl1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atgcgagaag aaaataggtt ctccaccgtg ggggtggggg tccccgagga tcgaactcag
       61 ttactaaggc ttggcaggaa acgcccgtac tcgctgagcc ctctcatcgg cccaaactac
      121 tattttgaca ttcaccaatt caaacgtaaa acgacggatc ggactcgttc cccgctgctt
      181 cagaggctgg gtgatggtgg ctgcgaccaa actacggggg cggagcctga gcgccggagc
      241 gaaggcgtgg tgcgctgtcc aatgagcacg cgcggatcgg ctccctcgcg ggatctgggt
      301 ttcttacccc gccccctcag ggatttgatt gggcggctgg cccgggtgct ccgccttcgt
      361 agagcggtga cggtcacagc caggcgcagc cgggacccgg acatttacag gccagtgaat
      421 ggtgagttca gggtctcgag atccgatacg ggcggaggag ctgttggaac cggctgggac
      481 aggactcgcg ctagcaaggc gtctgcgcca cggacgcctc cggttccgct tggctggctg
      541 gttcactttc gattcggccg ggttctcctc tgccctgttc ggcttggtcc ggttctctcc
      601 ggcttggctc ggttctctcc ggcttggctc ggttctctcc gacccggcca tcgctaccct
      661 cggtcagcca gagactgcag cgggacccgg gtgccccttc gcgtccccga ggcgactggg
      721 cccagggctg gcgctgtctt cactctgtgc attgacgacg ggcggctcgt gacgaggctc
      781 cgggttccgg tgctggtccc cagccggtcc tcgtcgtacg ggaagcctcc actcaggtgt
      841 ctgaagtgaa tctggatttg taggtctcat tccgcttcct cggttcgaga aaacactatc
      901 agtccacctg tccttcattc tgcttttcga atttcttagt tcccaaagaa atggatgaca
      961 cttgagtgtt ttgaaggttt gttttctagt cgggcgtggt ggcttgggaa gactgatgca
     1021 agaggatccc aatgtttgag gccagactgc aagtgacagc aatcctcctg cctttaacct
     1081 gctcagtact gtacaggctg tttccccttc ttttcctttc ccttcccctc atcttgtcat
     1141 cttgcacttt tctcatacag taaggaatcc tttagccagc gctgcgaggg acacgtgtgt
     1201 tgtctgcagt cgctggtaac cgcttcgtgt ggtggtggat tggatcagaa cgaggctgag
     1261 gagccgtcac cctcagcctg ggaccgctga agtttttgtg tgctcttggg aagcatgcct
     1321 ggatgaaaga ggagtccaga gaaagggaag ataagacagg agtgcaccag cacaagaaca
     1381 taactttgaa aacaaccgag ttttcttgaa ctgtatacct tcagaaggga ggaggatgat
     1441 cctgtctctg cccaccctga ctgtcctcat cccgctcatc tccctggcgg gcctgttcta
     1501 ctccgcctct gtggaagaaa acttcccaga gggctgtacc agcgccagca gcctgtgctt
     1561 ctacagtttg cttctgccgg tcaccgtacc ggtgtacgtg ttcttccacc tgtggacttg
     1621 gatgggcctg aagctcttca gacataacta gggtagctga ggccccgctt gtgcacgggg
     1681 caagaggctc ctggttgttg ggttctgccc tcaggtgttg cagattctcc tgttagtgct
     1741 gtagctgaaa aacacttaca ataaatatgt cccaagggag aggaacatga
//
