LOCUS       XM_039082804            6918 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized threonine-rich
            GPI-anchored glycoprotein PJ4664.02-like (LOC120094328), mRNA.
ACCESSION   XM_039082804
VERSION     XM_039082804.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..6918
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6918
                     /gene="LOC120094328"
                     /note="uncharacterized threonine-rich GPI-anchored
                     glycoprotein PJ4664.02-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein, and 27% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:120094328"
                     /db_xref="RGD:41076305"
     CDS             1..6918
                     /gene="LOC120094328"
                     /codon_start=1
                     /product="uncharacterized threonine-rich GPI-anchored
                     glycoprotein PJ4664.02-like"
                     /protein_id="XP_038938732.1"
                     /db_xref="GeneID:120094328"
                     /db_xref="RGD:41076305"
                     /translation="MTSVLRPTPKTSTRSLDTSPTAVTDSTLLWRNSIPSKLATLKGT
                     GNSKKAVNTMKATSSTSSVHFWSVIPKTTLSRMLSEMTGKSTGSPSMTSSNYTRTEIY
                     NGAALNSTLLSDTSTILTMTETNITEMISTTKPTSNLTEVPFTNSVLVSSTESITNSN
                     SNPITNQLIKPEETITGMSTGPPNAIISKEITTNKTEHFVVSPNVIISLGISATMSGS
                     GMYSSDSQNYSLLETFTDSSLPEEISSKGFRVSTIRTNSSSPTSFTSDRHLPTTHNTT
                     KQGWTTARIQSSTLEKMDSFTQYSPNHTEMPMNLSFLESSTKDMSAGTTSFTTLHESI
                     SEDTSLGITSESQLTNSNTGHSLVTSSKVTSKNPSTSASIKVTNSSRVNTFPHPEARD
                     PPKIIASEPWTSTPWYDAMFADAITMPHGSYSPSVISSMIDTHNTSCTCSMAYVITVS
                     KDVIPANLHTSSGHVTSSIPSLNSRPQKSFNTAQVSKISQVTTVSSVTKGNKKNGNSV
                     PQLKQTITPIPILSEHEYFTILISSEGTTFSPPQSMSFATEGTEKQTAFSFIEAWKNS
                     SKLEDRHPTKEHTISQNNVSTTPSLLTSATKGISAGRTFLSKLYHSTSENTSTGISTK
                     YSRSTTTTESEETTSSHRKYSEVMSNMVTSKDISTMTSNIETQYSGTQTFSLSEFMIK
                     STNINPTTTSRTHLLLKESMSTSSTRPTTEASSYSPVPANVGRYSTTSLDYVTSIFII
                     PKFPIPTGLYMTSKSVTPSIPNSNSAQLSKISERISVSSLTPVEDMKDNTYKQTTTPT
                     SVSVENVSFTTIMSTMELSPTQSVSFESTEIMTGTSFPLRTAWTDFSTAENINATTEY
                     NTSHSELSTSHSPFESRIGLISADSIFFSDFQSTSEDTSPRTPISLPTSTISSESEEM
                     KSRPMGHSTVISAILTYPETLSIALVNDTHSSGTHIFPFSESMAPVNSSSASWTMTPE
                     KKSMSTDSKKIQESLSLTPDTSLSHSNSSHTSESVVSLFTIAKDSIPTDSYTSSGSVT
                     LYIPSWSSISQLSSNPIHAPQMSQMNTYSSVTPGSNMGISHPVPEFQYTIPSVSVPSE
                     RKTFPTTLPITEVSILSPTQSTSYKNTNMSTQTVTHLTTLTQANVSEKVHSSTDFIRS
                     PSAVTNSSSTLVSSTTFISPNNTILPMRQYFTSEHTKVTSEDMTSGIFTKFHGFNTIP
                     EIEEMSTSQIRNSNVTSNIALSLETSTMSSELDNFMSFSPAPTITETSTFLSQRYEVP
                     SIETFSTLKRSLPGNSPGYLDKSSLISSVTSTGENGTPSPSSLVSVLTPSKEAITTRL
                     DKQLDNLSTSFLNWTSSTHSSQETSQVSKHSQTSPTSSVKSEIIMEVSSSVLQSKSSI
                     TPASVSTKTAFSTMFQNPLMGTTVFISQPTFSDASGTVTNTTSSLNQPLPETITLEET
                     TIPTTHNTALSQLTPNMSTSLSISESIRAGRIPTGSPLYPSESEDITPRSISGLITYS
                     STEEHIELSSIFGVANSVSLLNDTLSRDTSTTVPMTEFSSSEPQTSPHSSWITESSIF
                     GEQSQTSSLSKEKHTTIDSTTTMTEKTTLLPVTSTSQGQNVSSLDFAAALVTSIQEAI
                     SNEKDTSIISGSTSIQSLDTTEHSTPGSSYNMENLQTSHISSKSPATRVETDSPGMHS
                     KGTVLINSVPSRITKMTSQSNWDTIISPSMPLFNGAHSETQKTFPITSIKQETSMSED
                     IDLTKHISGLFTVSTSTDPGISRKEANSTDRSSIPSSVSFAKTTDISIRNASSSSTLY
                     FPSPDISQVVSVEKSSNITILLNTTDPTADAEVFSAITQTFLHSDSISHPSSSELLSW
                     TDSPLQEATSSMNYIETIPGTASLFPAISLSEGQGLFFPSSGETIKDELLINLASFRT
                     SFPSWSNSELATSKDTRTSQTSYSPTRTEVTTVDIATSGYQAQYTVSSETLSFGSTAS
                     SLLTAPTKTTSASSLSPQSSNSTSFPKASFPTSELFKTKDILSRSLKLGVSFPPNLSS
                     TSLEVLGLSEVNKENHNSPSSFTVTNMNTISMGHEQSSSVSMPYDSSRDTNKMSTPSS
                     IWVTTMSTSLSSHSETPRSNTEPLSHLTSGLRDTSISLQTNKPSVPEPTLLLPSSEAD
                     GTSTMNISSPYQNLSSGFTKVSAETVTILNTSSSILESTGITSFPVYNFTIPSQESIL
                     VPRTDILPSAETTLIDPTLSPTEEMTLIATTSNPTSSSHVTSKNFHSIIQSSHLFATI
                     VKKLSPSISTPLPYPASSTTDSTASPSSQEITTPSGNLQIEDNGVVIFHGYVYNLEV"
ORIGIN      
        1 atgacatcag ttcttagacc aacacctaag acaagcacaa gaagtttgga cacaagccca
       61 acagcagtga ctgattctac tttactttgg agaaatagca ttccttcaaa gctggccact
      121 ctaaaaggca caggaaactc aaagaaagca gtgaacacca tgaaagctac cagttctact
      181 tccagtgtac atttttggtc agttatacct aaaactacat tgtccagaat gctctctgaa
      241 atgacaggga agagcactgg ttctccttcc atgacctcat ctaattatac caggactgag
      301 atatataatg gggctgcatt aaatagtact cttctgtcag acacatctac cattctaact
      361 atgacagaaa ctaacataac tgagatgatt tcaacaacaa aacctacttc taatcttact
      421 gaagtgccct ttactaattc tgttcttgta tccagcacag aatctataac taacagcaat
      481 tccaatccaa taactaatca gctgatcaaa ccagaagaaa ccatcactgg aatgtctact
      541 ggacccccaa acgccataat cagcaaagaa attaccacta ataagacaga acattttgtg
      601 gtatccccaa atgtgattat atctcttggt atatcagcaa ctatgtcagg atcaggaatg
      661 tactccagtg actctcagaa ttattcattg ttagagacat ttacagactc atcactacca
      721 gaagaaatca gctctaaagg tttcagggtt agtacaatca gaacaaattc ttcatcacct
      781 actagtttca catcagacag acatctacct actactcata acactaccaa acaaggttgg
      841 accacagctc gaatacaatc tagcacactc gaaaaaatgg attcatttac acagtacagt
      901 ccaaaccata cagaaatgcc tatgaatctc tcttttcttg aatcttcaac aaaagacatg
      961 tctgctggaa ccacatcttt tacaacacta catgaatcaa tatcagaaga tacttcttta
     1021 ggaatcacct cagaatcaca attgacaaat agcaacactg gacattctct ggtgacatca
     1081 agcaaggtga cttctaaaaa tccatcaacc tctgcctcaa tcaaggtcac taactccagt
     1141 agggtgaata catttccaca cccagaagcc agggatcctc ctaaaattat tgcttcagaa
     1201 ccatggacat ctactccttg gtatgatgcc atgtttgcag atgccataac aatgccacat
     1261 gggtcatatt caccttctgt tatttcttcc atgatagaca cacacaatac atcatgtact
     1321 tgttctatgg cctatgtcat cacagtttct aaggacgtaa tcccagcaaa cttgcacaca
     1381 agctcaggac atgtgacttc ctcaatccca agcttgaata gcagacctca gaagagtttc
     1441 aacactgcac aagtgtccaa aatctcacag gtgaccactg tttcctcagt cacgaaagga
     1501 aacaagaaaa atgggaattc agtaccccaa ctcaaacaaa ccattacccc tataccaatc
     1561 ttatctgaac atgaatattt cacaattcta atcagctcag aaggcaccac attttcacct
     1621 ccacagtcaa tgtcctttgc cacagaaggt actgaaaaac agacagcttt ttcctttatc
     1681 gaagcatgga aaaattccag taaattggaa gataggcatc caacaaaaga acacacaatt
     1741 agccagaata atgtatctac tactccttct ctgctcacat ctgcgacaaa agggatatct
     1801 gctggcagaa cattcctttc taagttatat cactcaacgt cagagaacac ttccactgga
     1861 atctccacca agtactcaag atctacaacc actacagaat cagaagagac tacaagcagc
     1921 cacaggaaat attctgaggt gatgtcaaat atggtaactt ccaaagacat atcaaccatg
     1981 acttcaaaca tagagaccca atacagtggg acacagacat tttcactttc agaattcatg
     2041 attaagtcta ccaacatcaa ccctacaacc acatccagga ctcatttact tttgaaagag
     2101 tcaatgtcta caagttcaac aagacctaca actgaggcat cctcatattc tccagttcct
     2161 gccaatgtag gcaggtacag caccacgtct cttgattatg tcacttccat cttcataatt
     2221 cctaagttcc caatccctac tggattatat atgacctcca aatcagtgac cccttctata
     2281 ccaaactcca acagtgccca actctcaaaa atctcagaga gaatctctgt ttcctcactt
     2341 acaccagtgg aagacatgaa agataacact tacaaacaaa ccaccacacc tacatcagtc
     2401 tcagttgaaa atgtgtcttt cacaaccatt atgtcaacca tggaactttc acctacacag
     2461 tcagtctcat ttgaaagtac agagattatg acaggtacat ctttcccctt gaggacagca
     2521 tggacagatt tcagtacagc tgaaaacata aatgcaacca cagaatataa cactagccat
     2581 agtgaacttt ccactagcca ttctccattt gaatctagga taggactcat atctgctgac
     2641 agcatattct tttcagattt tcagtcaaca tcagaagata cttcccccag aacccccatc
     2701 agtctcccta cctccactat cagttcagaa tcagaagaga tgaaaagtag acccatggga
     2761 cattctacag ttatctcagc cattttgact tatccagaaa cattaagcat tgccttagta
     2821 aatgatactc actccagtgg gacacatata tttccatttt cagaatccat ggctcctgtc
     2881 aacagttctt cagcatcatg gacaatgact cctgagaaaa agtccatgtc tacggattcc
     2941 aaaaaaatac aagagtcact ttcactgacc cctgatacat ccttgtcaca cagtaatagt
     3001 agtcatactt ctgaatctgt tgtctctttg ttcacaattg ctaaggattc aattccaaca
     3061 gattcatata ctagttcagg ttctgtcact ctttatattc caagctggag cagcatctct
     3121 caactaagct ccaaccccat tcatgctccc caaatgtccc agatgaatac ttattcctca
     3181 gtcacaccag ggtccaacat gggaatcagt catcctgtac ctgaattcca atataccatt
     3241 ccatctgttt cagtgccatc tgaaaggaaa actttcccca ctaccttgcc tattacagaa
     3301 gtatccatac tttcacctac acaatcaaca tcatataaaa atacaaatat gagcacacag
     3361 acagttaccc acctgaccac attgacacaa gctaatgtat ctgagaaggt acactcaagt
     3421 acagatttca ttagaagccc ttctgcagtg actaatagtt cctctactct ggtatcaagt
     3481 acaacattca tatctcctaa taacacaata ctcccaatgc gtcagtattt tacatcagag
     3541 cataccaagg ttacatcaga agatatgacc agtggaattt tcaccaagtt tcatggcttc
     3601 aacaccatcc cagaaataga agaaatgtct accagtcaga ttagaaattc taatgtgact
     3661 tcaaacattg ccctttccct agaaacatca accatgtcat cagagttaga caattttatg
     3721 agtttcagcc cagcccctac aatcacagag acatccacat ttctaagcca aaggtatgaa
     3781 gtcccatcaa ttgaaacttt ttcaacttta aaaagaagtc tacctggcaa ctctccagga
     3841 tatcttgata aatcttcctt aatatcctct gttacttcta caggagaaaa tggcaccccc
     3901 tctcctagtt ctcttgtctc agtcttaacc ccttctaagg aggcaatcac aaccaggttg
     3961 gataaacagt tagataattt gtctacttca tttctgaatt ggaccagtag cacacattca
     4021 agccaagaga cttcccaggt tagcaaacat tcacagacaa gccctacttc ctctgttaaa
     4081 tcagaaataa ttatggaagt cagcagttct gtactccaat ccaaatcttc tattactcct
     4141 gcatcagttt caactaaaac tgcattttca accatgtttc agaatccctt gatgggtact
     4201 acagttttta tttcacagcc aacattctct gatgcctctg gaactgtaac aaatacaacg
     4261 tcctccctaa accaaccact tccagaaact attactcttg aagagaccac catccccaca
     4321 acacataata ctgctctgtc tcagttaacc cctaacatgt ctactagcct ctccatttca
     4381 gaatccatta gagctggcag aatccccaca ggaagccctc tttatccctc agaatcagaa
     4441 gatattactc ctagaagcat ctctggactc attacctact ctagcacaga agaacacata
     4501 gagttaagct ccatttttgg ggtagctaat tctgtgtctt tattaaatga taccctatcc
     4561 agggatactt caaccactgt ccctatgaca gaattttcat catctgagcc tcaaacatct
     4621 ccacattcat cctggataac tgaatctagc atttttgggg aacagtctca aacaagttct
     4681 ttatccaagg aaaaacacac cactatagat tccacaacta ctatgactga gaaaaccaca
     4741 cttttacctg ttacttctac ctctcaagga caaaatgtct cctcccttga ttttgcagct
     4801 gcactagtaa cttctattca agaggcaatc tcaaatgaaa aagatacaag tataatatct
     4861 gggagcacct caattcaaag cctggatact acagagcatt caactccagg ttcttcatat
     4921 aacatggaaa acttgcagac cagtcacatt tcctcaaaat ctccagcaac aagagtggaa
     4981 actgatagtc ctggaatgca ttccaaaggc actgtgttaa ttaattcagt tccatcaaga
     5041 ataactaaaa tgacttcaca aagcaattgg gacacaataa tttccccatc aatgccctta
     5101 tttaatggtg cacattcaga aactcagaaa actttcccca taacttcaat aaaacaggaa
     5161 actagcatgt ctgaagatat tgacttgacg aaacatattt ctggtctttt tacagtgtct
     5221 actagcactg accctggaat ttcaagaaaa gaagctaact caactgatag atcatccatt
     5281 ccaagctctg tatcctttgc aaagacaaca gacatctcaa ttcgaaatgc ctccagtagc
     5341 tctactcttt actttccaag ccctgacatc agtcaggtag ttagtgttga gaaatcatcc
     5401 aacatcacca ttcttttgaa cacaacagat cctacagctg atgctgaggt gttctctgct
     5461 ataactcaga catttttaca ttcagactca atctctcatc ccagcagttc tgagttactc
     5521 tcatggacag actctccact ccaggaagca acttcctcca tgaattatat agaaactata
     5581 cctgggacag catcattgtt tcctgctatt tctctatcag aaggacaagg gctctttttt
     5641 ccctcttctg gcgaaacaat taaagatgag ttgctcataa acttagcttc ctttagaact
     5701 tcatttccaa gctggagcaa cagtgagcta gccacctcaa aggacaccag aacctcacaa
     5761 acatcttaca gtcccaccag aactgaagta accactgtgg acatagccac ttctggatat
     5821 caggcccaat acactgtatc atctgagact ctttcattcg gtagtactgc ctcttcattg
     5881 ttgacagcac caaccaagac tacttctgct tcctctttat caccacagag ctcaaactcc
     5941 acttcttttc ctaaggcttc attccccact tctgaattgt ttaaaacaaa agatatattg
     6001 agtagaagct tgaaattggg agtgagtttt cctccaaatt tgagcagcac atcacttgaa
     6061 gtcctgggtt tatctgaagt taataaagaa aatcataatt ctccctcaag tttcacagta
     6121 accaatatga ataccattag tatgggacat gaacaaagtt cctctgtatc aatgccttat
     6181 gactcatcta gagacaccaa taaaatgagc actccttcct ctatatgggt gactactatg
     6241 tccacatcat tgtctagcca ttcagaaaca ccaagatcta atactgagcc actttcccat
     6301 ttgacttctg gattgcggga cactagcata tccctacaaa caaacaaacc ttctgttcct
     6361 gagcccactc tccttttgcc aagttctgag gctgatggca catctactat gaatatatca
     6421 tcgccatatc agaatctatc ttcagggttt actaaagttt cagcagaaac agttactatt
     6481 ttaaatactt cttcatctat tctagagtct actgggataa catccttccc agtatacaat
     6541 tttactatac cttctcaaga aagtatcctt gttccaagaa ctgatatact accttcagct
     6601 gagaccactt tgattgatcc aacactttct cccacagagg agatgacttt aattgccaca
     6661 accagcaatc caacatccag ttcacatgtg acttccaaga atttccattc tataatacag
     6721 tcaagccatt tgtttgccac cattgtaaaa aaattatctc cttcaatttc aacaccattg
     6781 ccctatcctg cttccagtac cactgactct acagccagcc catcctccca agagattact
     6841 actccttcag gtaatttaca aattgaagat aacggtgttg tgatattcca tggttatgtt
     6901 tataatctcg aagtctag
//
