LOCUS       XM_039080617            2010 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus MLV-related proviral Env
            polyprotein-like (LOC120093887), mRNA.
ACCESSION   XM_039080617
VERSION     XM_039080617.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2010
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2010
                     /gene="LOC120093887"
                     /note="MLV-related proviral Env polyprotein-like; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 14 Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:120093887"
                     /db_xref="RGD:41070209"
     CDS             1..1884
                     /gene="LOC120093887"
                     /codon_start=1
                     /product="MLV-related proviral Env polyprotein-like"
                     /protein_id="XP_038936545.1"
                     /db_xref="GeneID:120093887"
                     /db_xref="RGD:41070209"
                     /translation="MRNCVKATPQTWRVQRTPNPLKLKLLVLLWPRVSGGISPHHIYN
                     ITWTVTNLMTGRLANATSVRGTLADAFPPLYFDLCDVIDYKWEPDTTHNWHPSTTYYG
                     CSPASHSKEIYVCPGHRVSRQCGGPGSGYCAQWGCETTGDVYWKPSSSWDLITLKRDG
                     RLSYTLYKRGAKCNPLVLHFTNSGRRATWDGPKSWGLRLYVTGTDPVGLFSLNRQVSP
                     LATRPIGPNLVLPDQKPPSLPAQAQPPSLPKVTQAPGSTPTSPFSTTGGSTILISPSP
                     GTGDRLFNLVAGAYLALNYSDPFRTQECWLCLVSGPPYYEGVAVIGNYTNLTAAPDSC
                     ANTPSHKLTLPEVSGQGFCLGNVPHTHQTLYNTTQKIPIGNYFLAAPKGTYWACNTGL
                     TPYISATVLNQSSDYCVLVEIWPKVTYHESEYIYSFFERQTRFRREPATLTLALLLGG
                     ITLGGVAEGIGTGTTALIETGHFHQLQTAMNADLKAIKESVSTLEKSLTSLSEVVLQN
                     RRGLDMLFLREGRLCAALKEECCFYADHTRIVRDNMAKLRERLSQRQKLFDSQQGWFE
                     GWFNRSPWFATLLSTLMGPLLILLLILLFGPCILNRLVQFMRDRLSVIQTLVLTQQYH
                     RLR"
ORIGIN      
        1 atgaggaact gcgtcaaagc tacaccccag acatggagag ttcagcgcac tccaaacccc
       61 ttaaagttaa aactcctagt ccttttgtgg cctagagtca gtgggggaat aagcccccac
      121 cacatttata acattacctg gacagtcact aatctcatga caggaaggct ggctaatgct
      181 acctccgtaa gggggacgct ggccgatgcc ttccctccct tatactttga cctttgtgat
      241 gtgatagact acaagtggga gcctgacact acccataatt ggcatccctc aaccacctac
      301 tatggttgca gtccggcttc ccacagcaaa gagatctacg tttgccctgg acacagagtg
      361 agccggcagt gcggagggcc ggggagcggg tactgtgccc agtggggatg tgagactact
      421 ggggatgtgt attggaagcc atcctcatct tgggacctga taactctgaa acgagacggt
      481 cggctttctt acaccttgta taaacggggc gcgaaatgca atcccctcgt cctccacttc
      541 accaactcag gtagaagagc gacctgggac gggcccaaat cttggggcct gcgcttatac
      601 gtaacaggga ccgatccggt gggtctgttc tctctaaata gacaagtctc tcccctggcc
      661 actcgaccca ttggacccaa cctagttcta ccagatcaga agcctccctc gctcccagca
      721 caagcccaac ccccgtcatt gcctaaggtc acccaggccc ctggtagtac ccctacaagc
      781 cccttctcca caacgggggg ctccaccatt ttgatctccc cgtcgccagg caccggggat
      841 cgattattca atttggtggc tggtgcatat ctggctctca actattcaga cccttttagg
      901 actcaggagt gctggttgtg cctcgtttcc ggtccgccct attatgaagg ggtggcagtc
      961 attggaaatt ataccaacct gactgctgcc ccagacagtt gtgccaatac ccccagccac
     1021 aaactaactc tgcccgaggt ctcgggacaa gggttctgct tggggaatgt accccacaca
     1081 caccagaccc tctacaacac cactcagaag attcccatcg ggaactactt cctggcagcc
     1141 ccaaaaggca catactgggc ctgcaatacc ggactaacac cctacatctc agccacagtc
     1201 ctcaaccaat cctctgacta ttgtgtatta gtagaaattt ggcccaaagt cacctaccat
     1261 gaatccgagt atatatactc atttttcgag agacagactc gtttccgacg agagcctgcc
     1321 accctgactt tagctttact cctaggagga atcaccttgg ggggagtggc cgagggtata
     1381 gggaccggga ccactgcact catagaaact ggtcatttcc atcagttaca aacagccatg
     1441 aatgcagatc ttaaagctat aaaagagtct gtgagtacat tagaaaagtc cttaacatcg
     1501 ttgtctgaag tggtcctcca aaatagacga gggctagata tgttgttcct ccgtgagggt
     1561 agattatgtg ctgctctaaa agaagagtgc tgtttctatg cagaccatac tagaatagta
     1621 agagataata tggctaagct tcgagaacgc ctgtcccaaa gacaaaaact gtttgattcc
     1681 caacagggat ggttcgaggg gtggtttaac cgatcccctt ggtttgctac cctcctgtct
     1741 accctgatgg gacccctact tattcttctc ctaattcttc tttttggacc ctgcatcctt
     1801 aataggctgg tacagttcat gagggataga ctttcagtca ttcagaccct cgtactgacg
     1861 cagcagtacc ataggctgag ataacaagag acagaaattt cttgaccaag tcgagtgaaa
     1921 gatttcactc aaagttaaca aaaaaatggg agaatgaaag accccagctt agcagcagta
     1981 acgccatttt gcaaggctgt acttaagatg
//
