LOCUS       XM_039080391            1768 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus keratin, type II cytoskeletal 6A-like
            (LOC120093742), mRNA.
ACCESSION   XM_039080391
VERSION     XM_039080391.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080391.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1768
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1768
                     /gene="LOC120093742"
                     /note="keratin, type II cytoskeletal 6A-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 99 Proteins, and 50% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:120093742"
                     /db_xref="RGD:41262031"
     CDS             1..1659
                     /gene="LOC120093742"
                     /codon_start=1
                     /product="keratin, type II cytoskeletal 6A-like"
                     /protein_id="XP_038936319.1"
                     /db_xref="GeneID:120093742"
                     /db_xref="RGD:41262031"
                     /translation="MSTKTVIRSQTSHRGFSAGSARLPGLTRSGFSSVSVCRSRGSGG
                     SRAVCGGAGFGSRSLCGVGSSKRISIGGGSCGIGGGYGGRFGGSFSYGGGAGGSFGFG
                     AGAGFGGGYGGAGFPVCPPGGIQEVTINQSLLIPMNLQIDPTIQRVRTEEREQIKTLN
                     NKFASFIDKVRFLEQQNKVLDTKWALLQEQGTKTVRQNLEPLFEQYINNLRRQLDSIL
                     GERGRLDSELRNMQGTVEDYKSKYEDEINRRTAAENEFVTLKKDVDAAYMNKVELQAK
                     ADSLTDEINFLRALYEAELSQMQTHISDTSVVLSMDNNRSLDLDSIIAEVKAQYEEIA
                     KRSRAEAESWYQTKYEELQITAGRHGDDLRNTKQEISEINRMIQRLRSEIDHVKKQIA
                     NLQAAIAEAEQRGEMALKDARGKLEGLEDALQKAKQDMARLLKEYQDLMNVKLALDVE
                     IATYRTLLEGEECRLNGEGVGPVNIAVVQSTMSSGYGSAGGASSSIGLGGGSSFSYGG
                     SHSIGGGFSAGSGRGISSGLSSSGGSSSTIKYTTTSSTRKSYRP"
ORIGIN      
        1 atgtctacca aaaccgtcat ccggagtcaa accagccacc gtggcttcag tgcgggctca
       61 gccagactgc ctgggctcac ccgctctggc ttcagcagtg tgtctgtgtg ccgctccagg
      121 ggcagcggtg gctcccgtgc agtgtgtgga ggagctggct ttggcagcag gagtctctgt
      181 ggtgtgggca gctccaagag gatctccatc ggaggaggca gctgtggcat tggaggaggc
      241 tatggcggcc ggttcggagg aagcttcagc tatggaggag gagctggagg tagctttggc
      301 tttggtgctg gagctggctt tggtggtggc tatgggggag ccggcttccc agtttgccca
      361 cctggaggca tccaagaggt caccatcaac cagagcctcc tcatacccat gaacctgcaa
      421 atcgacccca ccatccagcg cgtcaggact gaggagaggg agcagatcaa gaccctcaac
      481 aacaagtttg cctccttcat cgacaaggtg cggttcctgg agcagcagaa caaggtcctg
      541 gacaccaagt gggccctgct gcaggagcag ggcaccaaga ccgtgaggca gaacctggag
      601 cctttgtttg agcaatacat caacaacctc cgcagacagc tggacagcat ccttggagag
      661 aggggtcgcc tggactcaga actgaggaac atgcagggca cagtggagga ctacaagagc
      721 aagtatgagg atgaaatcaa taggcgcaca gcagcagaga atgaattcgt gaccctgaag
      781 aaggatgtag atgctgccta catgaacaag gttgaactgc aagccaaggc agacagtctg
      841 acagatgaga tcaacttcct gagagctctc tatgaagcag aactgtctca gatgcaaacc
      901 cacatctcag acacatctgt ggtcctctcc atggacaaca accgcagcct ggatctggac
      961 agcatcattg ctgaggtcaa ggcccagtat gaggaaattg caaagagaag tcgggctgag
     1021 gctgagtcct ggtaccagac aaaatatgag gagctgcaga tcacagctgg cagacatggg
     1081 gacgacctgc gcaacaccaa gcaggagatc tctgagatca accgcatgat ccagaggctg
     1141 aggtctgaga tcgaccacgt gaagaagcag attgccaacc tgcaagctgc cattgccgag
     1201 gctgagcagc gtggggagat ggccctgaag gatgccaggg gcaagctgga agggctggag
     1261 gacgccctgc agaaggccaa gcaggacatg gccaggctgc tgaaggagta ccaggacctc
     1321 atgaatgtca agctggccct cgatgtggag atcgccacct acaggacgtt gctggaagga
     1381 gaggagtgca ggttgaatgg tgagggcgtt ggaccagtca acatcgccgt ggtgcagtcc
     1441 accatgtcca gcggctatgg cagtgcaggt ggtgccagca gcagcatagg cctgggagga
     1501 ggcagcagct tctcctatgg tggtagccac agcattggag gtggcttcag tgctggcagt
     1561 ggcagaggca tcagcagtgg actcagctcc tctggtggca gctcttccac catcaagtac
     1621 accaccacct cctccaccag gaagagctac aggccatgaa ttctgtctct aagagcttta
     1681 ccctgatccc agacatcatg gctgcagagc cctgtgctca gagccctgtg ctctggggct
     1741 tctccttgct agacaccaac ctcttctg
//
