LOCUS       XM_039080270            4604 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lymphocyte antigen 6L-like
            (LOC120093684), mRNA.
ACCESSION   XM_039080270
VERSION     XM_039080270.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080270.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4604
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4604
                     /gene="LOC120093684"
                     /note="lymphocyte antigen 6L-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 2 long SRA reads, 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 103 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:120093684"
                     /db_xref="RGD:40992931"
     CDS             354..926
                     /gene="LOC120093684"
                     /codon_start=1
                     /product="lymphocyte antigen 6L-like"
                     /protein_id="XP_038936198.1"
                     /db_xref="GeneID:120093684"
                     /db_xref="RGD:40992931"
                     /translation="MGQEAFEEGMQIPASAAAPPSETTVWAHWAVAGQGPWLCGIQAQ
                     LPLPGVMTGPLLVLWASLVSVELTRGLMATVVPARNLSCFQCFKVRRASLCHPMECQP
                     SEKVCVSNEVLLYTSTKSRTQISKRCAITCPNSNDLFEWSVKNIQARITRRCCSWDHC
                     NRAPDSWEGFRALPGRLLLPMGLGLFCILL"
ORIGIN      
        1 tggaatcaca ggcatacccc acctggttga gctatgtcat ttgaagtaag gcttcacgtt
       61 ggataatata acatattggt ttttacttta caatgtaagt aaacagaact ggctggattc
      121 tgacagtgtt tcctttcacc cagagatgga acgtttattg atccactttg gtggggaaag
      181 gcaagacact tgttttcttt gtgaataaag aatcggatag tgaaggaaag gcagtgtgga
      241 tgttggaagt tgagtaagat gggtaccagg cagactaagt aagaagattc agctgaacac
      301 tgcagcctgg accaccaggg ggagccacgg ccatgtgtag tcctgaatga gttatggggc
      361 aggaagcctt tgaggaggga atgcagattc cagcaagtgc tgcagctcct ccctcagaaa
      421 ccacagtctg ggcgcactgg gctgttgctg ggcaaggccc ctggctgtgt gggatccagg
      481 cacaattgcc actcccagga gtcatgaccg gcccgctcct ggtgctctgg gcatctctgg
      541 tgtctgtgga gctcacccga ggcttgatgg ccactgtagt gccagcacga aatctgagct
      601 gcttccagtg cttcaaggtt cgcagggcca gcctgtgtca tcccatggag tgccagccta
      661 gcgaaaaagt ctgcgtgagc aatgaggttc ttctttacac gagtacaaag agcaggactc
      721 agatcagcaa gcgctgtgcc atcacttgtc ccaactccaa cgatctcttt gagtggtcag
      781 tgaaaaatat tcaggccagg atcaccagac gatgctgttc gtgggatcac tgcaacagag
      841 cacctgacag ctgggagggg ttcagagcct taccagggag gctcctgctg ccaatgggtc
      901 tgggcctctt ctgcatcctg ttgtgagaaa cattgtcctg ggataccctt ccctgacaca
      961 cacagcctca aaccccacct tcatccattc caggacttac aaggcaaagc acagtccctg
     1021 agctagaagg gaggacacca taccctttgc ttaggaccca ggagcctgct cctacctaac
     1081 atcctggccc acaaagaata aaacccttct gctcctcatg gagatggaca aggaattttt
     1141 ccaaagcagg ccacaggctt cttcaagaaa gccctggacc tttagcacac ggtcaagcac
     1201 tatgagaggc agatggacct gaagaagcca gaggtgcagg atactctgac actgctctac
     1261 ctgtgtcccc tgttcatgca cgggaactag gacatctcac tcctcagaga cagtaaactg
     1321 ctgcttcccc acagcctggc tcctgatcct tcaatggctc actgccccag ggacccagct
     1381 ttcagtacag ccttctatgg ctagagcagc caggatctgc aaggaaccat ccagacagtt
     1441 acactcaaca cagagctgtc cctgaagcct gaggtccagc atagggagag agggtgagct
     1501 tgcaatccaa actcagatgt ggagtccagg gagggctgac tcaccactgt ataaggaagg
     1561 ggtggggaca gaatctggag tgccacaaca caggagagaa tgccaaggtg gtctaaaaac
     1621 acatctggtt gtggcttcac tgcagaaagt gaagcctggt ggacatgact agtacctggc
     1681 cttggaaggg ttcctgggta agggcaaagg taagaagcac agagagcggt gaggagactg
     1741 attaaggctg gtcaggccga gtgggctcta ctggccatga agtgcctgcc caagaaaaca
     1801 gggaggttgc tgggaggccc atggtatggg acagatgtat tattctatcc ctgctgtgac
     1861 cacatggcta gtcagcaaca acttaaggaa aaagtatttg gcccatggtt tggcccatca
     1921 tgatagggaa ggcactatgg agcccagccc cctgcagtga gagtgcaggg tgttgacttt
     1981 agaatggact agaaagctga gagggggagt tgggaccagg gtccaggtga aaacttcaag
     2041 cctgcacccc caacctcctg aaagttccac agcctcccaa aacactccta ccagctggtg
     2101 gaaaaggttt aaaacctgac cctgtaggga acatttctga ttcagtccca gcctttgggt
     2161 gtgtgtgggt tcttagtccc agatccttac atctgaccac tctggtccac acacacctgc
     2221 ctgcctccct gaccctgctc tccaggttca tgtactacac tctcagctga ggtggctgga
     2281 ggtggggagt acattataac ctccacccag gaccctgcag tttcttccta accagtgatt
     2341 gatatatccc atagcccttc agtggtccgg cgtctgtgtt cccagggtcc ccgactaaag
     2401 caagaccttc tctgcagttc tgggttttca cacagagttt agtcccactc actccccaca
     2461 ctgaccacag tagtgccaaa tccactgctt agtgacccag ggtaggggtc atggatgctg
     2521 ggagtctctg ggtaccaggc ctcggatatc ctccttggtt tatgctaagg aagcaggtac
     2581 taagaggacc atcttgccat gatagcatgg gctgggtacc tccttggagc caaattgtct
     2641 tgaaaaatat tacatacaag tgtcaccagg gtccgttgca ggcgaagcgg gtatttgaga
     2701 tcaacaaggc ctttctcagc ctagatgtgc ttgatcgagg ttctaaggtg cccagccaat
     2761 caatagtcat caatattcaa actgagacag atgccttgga gttcttggtc tcatacatct
     2821 atgtctcaca taagtgggcg aagagagaat gcaaaattta ccaagaaaag agcaagtaag
     2881 actcccagca tggagaggag ccagggaaga cactgtgagt agccttgtgg agaggctctt
     2941 ttcaaaataa gaattgtaga tagaagtagg caaagattag ggtagtttta gtgaaatgga
     3001 ttaattctcc agacacagcc taggccaaga caatgcctcc ccagtgcagc caggagagaa
     3061 tctcgcaccg tttgcccaac ttagaataat cgcacggcaa accctcctcc ggtccatagc
     3121 tgactcgctt ctttatctac tcacttcgat gcacgagctt gtcacaataa tcttgacagg
     3181 tgctgccagt cacagcactg caggtaatgc tggtccccga ctttggcttt tgttttctcc
     3241 tccctggtaa attattctct ctatgtgcca tgatcagatt gtagttttac catagaactt
     3301 ttccctgtag tgcctatgga aagctgactg caatatcact ggtgagttga cccctagggg
     3361 agctcatcca cccaacctcc gtatcactta ctctacaccc tttggagttg tgcctaagat
     3421 cctcttctgg acagagcgag cagctacttg gtggtagtaa aattggattt gtagtcatgt
     3481 gccacatgtt agacaagagg ttaaactaaa ggtcaaacaa ccatgaccat acaaatgaca
     3541 gaggaagcca tacgcaaagc atatatacac tacgtataga cacatataga cacataggca
     3601 cacacatcca cacatccaca cacacacaca cacatgccta cacacacaca cacacacaca
     3661 cacacacaca cacacacaca cacacgcttt aggtatgcat gggaaatcgt aaagcttacc
     3721 aaggtagtag gacataaaat aatgtctaga tgtaagcaaa ttatgtaaag ataccactgc
     3781 cattaaagga aaaaagggaa aaaagggccc aatatcagtt tggaagcgac agctgacttg
     3841 aacacagaca gaagaaacag ggaagacatg agcagcttaa cacctgaaat cctgatgagt
     3901 gtgtagcagg tctgggggag gtagtgaaga aatagcatca gcagaaagaa acattagagg
     3961 aaatgacagc tgggggtgca ggtggaggtg ggggtagctc agtggtggaa tggctcaccc
     4021 agcctgtgag actctgaggt ggatccctga cccaaggaag aaagacaggc aagaacgtag
     4081 gaaatttttc tcatctcaga gaaaggcaca agtaaatgct tgagaggtcc agaatccatg
     4141 aactctaaac agattaaatc cacatgtgtt aacaaaacac atacatgatg taccacatat
     4201 catagtcaca agctacaggt tttaatggag agaagttgag acataaggga aggtcacggc
     4261 catgctagcc ctggacagag cggtggtggg agtatgggat ggcattcaga gggcaggcac
     4321 agaaacgaga cctcacattc ctaaagggtg gaggtcatcg aaaaagtcaa gtctgaggtc
     4381 ctgctctgaa tttaagaggc atgggtagga caagctagtg aggtgaagcc tagaggaggt
     4441 gtggggagca ggtgtcaaag aatggggaga agccgagaag gttctgcaaa caaggattgg
     4501 ggttgtgtta ggttttaatt ttgtgagttt gataattcct ctgtagttat gtgaaatgtc
     4561 agtgtttggg aaatgaacaa agagagtaca gaataattct taca
//
