LOCUS       XM_039080131            5574 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus forkhead box protein D1-like
            (LOC120093597), mRNA.
ACCESSION   XM_039080131
VERSION     XM_039080131.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5574
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5574
                     /gene="LOC120093597"
                     /note="forkhead box protein D1-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:120093597"
                     /db_xref="RGD:41062939"
     CDS             120..914
                     /gene="LOC120093597"
                     /codon_start=1
                     /product="forkhead box protein D1-like"
                     /protein_id="XP_038936059.1"
                     /db_xref="GeneID:120093597"
                     /db_xref="RGD:41062939"
                     /translation="MFNNWQLFACCSVHPAPSAPQPRFSAGSGGERPTQGEPVFSQSR
                     CPDSRSQVGQADRGGETRTRRPPYIPGQPRRPRLKQLSDPGRAGRQVSVGAAALRVPG
                     ATQWAGDIRALPTISCTCPAALLAGGTRARGEARRGRCSRRPPPPPAPAAALTCRTRR
                     GRRPRSAALAEPQGARAQLGRREGRRRTDAAPLRRGGRTAMGAEGGRADCACAERRAG
                     SSRPSPPPAPGERAGLEAGPGRSGEGPAHCGAPWRQEGLGAGCLSR"
ORIGIN      
        1 agtgtataaa caggtaggct gggaataggc aacatttcct tgaaactaaa gctcctctgg
       61 ggcaccggct ctaactcgga gcagagtgct ccagccagcc attaaggatc gatgttttaa
      121 tgttcaacaa ctggcaactc ttcgcgtgct gcagcgtcca cccggcacca tcggctcccc
      181 agcctcgctt ttccgcgggc agcgggggcg agcggcccac gcagggggaa ccggttttct
      241 cccagtcccg gtgtcccgac tcccgaagtc aggtcggcca ggccgaccgc ggaggagaaa
      301 ccaggacccg gcgacccccg tacatccccg gccaaccgcg ccgcccgcga cttaagcaac
      361 tcagcgaccc aggccgtgcg ggccgccagg tgagcgtcgg agccgccgcc ctacgggtcc
      421 ccggggctac gcagtgggcg ggcgacatcc gcgccctccc caccatctcc tgcacctgcc
      481 cggccgcgct cctggccggc gggacgaggg cgcgaggtga ggcgcggagg gggcggtgct
      541 cacgccgccc gcctccccct cccgctcccg ccgccgcact cacctgccgg acccgccgcg
      601 gccgccgccc gcgctcagcg gcgctcgcag agccgcaggg tgcgcgtgcc cagctcggga
      661 gacgcgaagg acggcggcgg acagacgccg ctccactccg ccgcggcggg cgcactgcga
      721 tgggagccga gggagggaga gccgactgcg cctgcgcaga gcgccgggcg gggagcagcc
      781 gtccctcccc gccccccgcc ccgggagaga gggcgggact agaggcgggg ccgggaagga
      841 gtggcgaggg gcccgctcac tgcggcgccc cctggcgcca ggaggggctc ggtgcaggct
      901 gcctctcgcg ctgagtccag ggtccctggg aactactcag gctggaaacc ctggagctac
      961 cttgcagggt gctgagctct cctgggatgg ttgaggcttt ggactgtgtt tggaggacaa
     1021 gcagaaccga gctggaattc caagtccgtg gatacctaaa gttggagtgg ggggttgagg
     1081 gggagctggt aaaacccaga tccttcctct tgtagttcca gaggccttct ctcatctttt
     1141 acgggaacta tttttattgt tttgttttgt ttatcgaact tccatcccac attccggctt
     1201 ccaagctgga aaaaccaaaa atcaaagtac agacagaatc aagccctgaa aatctaaccg
     1261 gaggtggggg gaggaagggg aggatgacgc aggacagtca tcctcggtat ctctaccaat
     1321 gtttgtgata ctcagagagg caggggctgt cattctagga ggtggtaata aaaagcaggt
     1381 tatatgtgtg gcccctgtga ccagccacct accgacctct gtgaccttaa gcgagttcat
     1441 ctgcaataac gacaatcttt tggctgataa atggatacta gaatgcctac ctcatcgagg
     1501 ttttgagagt taaatggttt aatatatgta atcaatacac ctcaccacag agtgtcaatg
     1561 agtgtaaccc tctcacaatc caacagaaac atagaaagtc attaactatt taataactca
     1621 tctctaatat atcaccaatt cttatccatt ccagctccca aagaattatt aaatgtatct
     1681 tgtttcaaag ggccatcatc atttgtagac tcctcacttc actcctttat gttatgttgt
     1741 ctatcaaaca tttattacat tgtgcctctg taccttctgg gagagacaca cacacacaca
     1801 cacacacaca cacacacaca cttttatcat gtgtcattgg taattactta acccaggttt
     1861 ccgtttcttt gtaaagcctt ccctagtgct tgcctgccac ccaacccaac tattaagggc
     1921 tcacatcctt atctgcgatc ccagaacact ttatctcagt ggttttcaac ctgcctacct
     1981 cttgtgatcc tttaatacag tccctcgagt tgcagtgacc acccgaccat aagattgttt
     2041 ctgttgctac ttcataactg taactttgct accactgtga gcctgtgctt tctgatgtct
     2101 taggccaccc ctgtgacagg ccacctgagc cccatgcggt cgtgaccccg ggttgagaac
     2161 tgctgctttc acacctttcc aggtcatact ccacatggac cgtaaggagg ctttcctttc
     2221 ttctccttag tctgtgtttt aggaacaggc cctctgcctg gaggaggaga actctgtcaa
     2281 tgtaggaaga ggggatgttt gacacacaag cagaatgctc tatgtggtgt aggaatattt
     2341 ggaggattgg ctctttaatt tattcaacat aagacccaaa acatcacaat aatactaata
     2401 tgtgtgattc ccagagtgac ccaaaggcac attaaccaca agatctgtag cctcggaaag
     2461 tgaactatag cactatttga caatgaggac agttagtgta gagtgctttg actagaaatg
     2521 gctcccagag gctcatatat ttggagctta gtcattggga atagcagtcc ttaacaggga
     2581 ttaggaggtg tggccttctt ggaggaagtg tgtcactggg ggtggacttt gagatttcaa
     2641 gagtctaagc cagaccctgt gtctctctct cttcctgctg cctgtgggtc tggatgtagt
     2701 tccttcagcc cattctctag caccatgtct gcctgcatgc caccagactc ccctccatga
     2761 caatgggcta aatcattgaa cctgtaaacc agccccggtt aaatgctttc ctttataaga
     2821 gtggtcatga tcatggtgtc tcttcacagc aatagaacat taacgaaggc agaagttggt
     2881 accaggagtg gggtgttatg accagcctgc ccgtgtttct ttgtggaata tggactttgg
     2941 aacttgggtg aggaaagcaa ttgaatattt tgagcagggt gtaatggccc atcctattag
     3001 gtacatggaa gacagaacaa tgtagattat gacagcccag ctcaagaggt ttcagaaaaa
     3061 aagaaaatta ataagtggtc tagagatcat acttgtgata ttttgtgaag aatgtggctg
     3121 ttttctgccc ttgtcaaaaa aaaaaaaaaa aaaaaaaaac tgcctgagac caagttgcag
     3181 agttttggat taatgatatt tggcagaaga gatttcaaaa caacctacta ttgattatgt
     3241 catgtggtta ttagtggcca gtcttaggca gatctataat gaaagggaac aagctatgca
     3301 gtttgaggaa aaaatgaagc accaggaagt gtgatggagc taagtccagg gcttaaggaa
     3361 acaaaaggtt ttaaagaaaa cccggatgct aaatggaaca aaggaagtgg tgccttcagg
     3421 gcaagacccc accccaaaaa gcttccaact tgtgaaaagg aattaaagaa aagcttaggg
     3481 gctggcatgg tcccacacac ttaaatccct ggacccagga agcaaaggct ggtaaagctc
     3541 tgagttccag gctagcttgg tctacagagc aagttccagg acagccacac ttaagcagtg
     3601 aaggaaaatg tctttggcca agggggccat gttccagccc caccacacag aagaactggg
     3661 cggctttggc catgtggttc tggcattaga gtaaagaata caagaagcag ggttggggat
     3721 ttagctcagt ggtagagcgc ttgcctagca agcgcaaggc cctgggttcg gtcctcagct
     3781 ccagggggga aaaaaaaaaa aaaaaagaat acaaggagct ctagaagctg ctgtccgaaa
     3841 acacccggga actggaatat ccactgttct gcagtgttcc tcattagacc cactatagcc
     3901 atggctgcat ttgaggccac tttcatggct caagaaaaag gaaataagaa atttagaggg
     3961 tggaaggctt aacaaagacc tgagactcta aatggcatgg tttcttctgc ctgccccctc
     4021 tgcagccaga cattaagcaa atatgtattt ctctatacaa cagagagaac tttctaagtt
     4081 ttacagagta cagtctcctt acaacctcaa aatacttaaa gtaattcccc agttttgctt
     4141 aatacagctt tgaatagatt gctgttaccc atcaccagaa aatattcctt tcatattgtt
     4201 tttcaaaatt ctgtccaaca tttaatcctt tatatggttg gagggcggtg cactccatga
     4261 caggagtgtt gaggtcagag gacaattttc aggagtgggt tttctttctg tctgtcccag
     4321 gattagactc aaatcatcag atttggtggc aaagcacatt tacctactaa gccatcttgc
     4381 tgacccagaa aatgttctta aatggtatat atatattttt tatgatccaa gcaaagcagt
     4441 atatgcttgt aatagaagca ctctcaaggc taaggtaaga ggattaattc tgagttcaag
     4501 gccagcctca cctatagagg ttgtttttgt ctttgttttt gctttgtttt ttaaggtatg
     4561 cattccacat agcaactaca cagactagaa catcagagca tagcagagta acaggaccta
     4621 cctgatcctg ataagtcagg ggtgcctgca gtggaggaat gaagaaatgc tctggtaccc
     4681 actgaaggca aaagctagtc tgacacgaat ggattcagta gtcagccatt ttgtcattgg
     4741 ctgtatgaag agaaatcctt ttcctcagct aagaactgga gttatggtta ccaatgttct
     4801 tcacacccat gctcctaaca atttcctatt agggcgaaga caaaccagtt tgagtttgtt
     4861 ttaatgcagt cagaatccta gacgctgaga tcttgttaac agcatgtttc aaggtcaagg
     4921 gctttgggga actaaagaac tctctcaggc cttacttatc caaacacaca agggacccaa
     4981 gagaatatgc tttcatgccg ttctaatgag atagcagaaa agactgaact tggaacaaca
     5041 gttagggaag ggggtggggg gagttttagg acgtgaagaa tgctaagctt aaataagtca
     5101 tgtggattga gcccagagct caatggaatt atagattctg aagacttatc ctatttctgt
     5161 agaaatagag tccaaatttc agaagtgaca ttttctaacg aacgtaaacc ctactttaag
     5221 tttctgcagc tgctcttggt acaaaaacct caacgtgtgt ttgagtcacc aagcgcctct
     5281 ctgatgggcg cataaacagt tgcaaaagga atctcatctc aagaatctga aaagagacta
     5341 aaagttgaat tggaatttga gaactggaat atgatggacg aaattgtcct aaatgttagc
     5401 ctgcaaggat ttctttcata acaatactga aattcaggca gaaaagaatc atgctgtcag
     5461 taacaacaac aacagaaagt ctaaattcag ctacccacca cccaaacaca gttcagaccc
     5521 ctcaacaact gttcagttgg gtccataact acagtgcccc aaacacaata catc
//
